Strain Fitness in Sinorhizobium meliloti 1021 around SMc00824

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00822 and SMc00823 overlap by 1 nucleotidesSMc00823 and SMc00824 are separated by 60 nucleotidesSMc00824 and SMc00825 are separated by 136 nucleotides SMc00822: SMc00822 - hypothetical protein, at 843,615 to 843,911 SMc00822 SMc00823: SMc00823 - hypothetical protein, at 843,911 to 844,306 SMc00823 SMc00824: SMc00824 - hypothetical protein, at 844,367 to 845,200 SMc00824 SMc00825: SMc00825 - glutamate--cysteine ligase precursor protein, at 845,337 to 846,710 SMc00825 Position (kb) 844 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 843.465 kb on - strandat 843.465 kb on - strandat 843.465 kb on - strandat 843.474 kb on + strandat 843.475 kb on - strandat 843.475 kb on - strandat 843.475 kb on - strandat 843.495 kb on + strandat 843.511 kb on + strandat 843.511 kb on + strandat 843.511 kb on + strandat 843.511 kb on + strandat 843.512 kb on - strandat 843.546 kb on - strandat 843.574 kb on + strandat 843.574 kb on + strandat 843.574 kb on + strandat 843.574 kb on + strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.575 kb on - strandat 843.577 kb on + strandat 843.796 kb on + strand, within SMc00822at 843.796 kb on + strand, within SMc00822at 843.796 kb on + strand, within SMc00822at 843.797 kb on - strand, within SMc00822at 843.806 kb on + strand, within SMc00822at 843.806 kb on + strand, within SMc00822at 843.806 kb on + strand, within SMc00822at 843.811 kb on - strand, within SMc00822at 843.909 kb on + strandat 843.931 kb on - strandat 843.931 kb on - strandat 843.931 kb on - strandat 844.129 kb on + strand, within SMc00823at 844.214 kb on - strand, within SMc00823at 844.271 kb on + strandat 844.272 kb on - strandat 844.299 kb on - strandat 844.304 kb on + strandat 844.323 kb on + strandat 844.368 kb on + strandat 844.845 kb on + strand, within SMc00824at 844.845 kb on + strand, within SMc00824at 844.989 kb on + strand, within SMc00824at 844.998 kb on + strand, within SMc00824at 844.998 kb on + strand, within SMc00824at 844.998 kb on + strand, within SMc00824at 845.053 kb on + strand, within SMc00824at 845.053 kb on + strand, within SMc00824at 845.053 kb on + strand, within SMc00824at 845.054 kb on - strand, within SMc00824at 845.238 kb on + strandat 845.239 kb on - strandat 845.239 kb on - strandat 845.239 kb on - strandat 845.341 kb on + strandat 845.342 kb on - strandat 845.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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843,465 - +0.5
843,465 - +0.9
843,465 - +0.4
843,474 + -0.6
843,475 - +1.8
843,475 - +0.0
843,475 - -0.5
843,495 + +0.3
843,511 + -2.1
843,511 + -1.0
843,511 + -1.5
843,511 + -0.1
843,512 - -0.7
843,546 - -0.5
843,574 + +0.8
843,574 + -1.0
843,574 + -1.3
843,574 + -0.1
843,575 - -1.6
843,575 - -0.8
843,575 - +0.4
843,575 - -0.2
843,575 - -0.3
843,577 + +0.7
843,796 + SMc00822 0.61 +0.3
843,796 + SMc00822 0.61 +0.4
843,796 + SMc00822 0.61 -1.5
843,797 - SMc00822 0.61 -3.3
843,806 + SMc00822 0.64 -1.9
843,806 + SMc00822 0.64 +1.0
843,806 + SMc00822 0.64 +0.9
843,811 - SMc00822 0.66 +1.4
843,909 + +0.5
843,931 - -2.0
843,931 - -0.9
843,931 - +0.0
844,129 + SMc00823 0.55 -1.7
844,214 - SMc00823 0.77 -0.9
844,271 + +0.1
844,272 - -1.3
844,299 - -2.9
844,304 + -0.1
844,323 + +0.5
844,368 + +0.3
844,845 + SMc00824 0.57 +0.8
844,845 + SMc00824 0.57 -0.1
844,989 + SMc00824 0.75 -0.2
844,998 + SMc00824 0.76 -2.3
844,998 + SMc00824 0.76 -2.3
844,998 + SMc00824 0.76 -0.3
845,053 + SMc00824 0.82 +0.3
845,053 + SMc00824 0.82 +0.0
845,053 + SMc00824 0.82 -0.4
845,054 - SMc00824 0.82 +0.1
845,238 + +0.7
845,239 - -1.0
845,239 - -0.7
845,239 - -0.4
845,341 + +1.3
845,342 - +0.1
845,348 - -0.2

Or see this region's nucleotide sequence