Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00788 and SMc00789 are separated by 1 nucleotides SMc00789 and SMc00790 overlap by 4 nucleotides SMc00790 and SMc00791 are separated by 64 nucleotides SMc00791 and SMc00792 are separated by 152 nucleotides SMc00792 and SMc00793 are separated by 101 nucleotides
SMc00788: SMc00788 - peptide ABC transporter permease, at 810,201 to 811,109
SMc00788
SMc00789: SMc00789 - peptide ABC transporter ATP-binding protein, at 811,111 to 811,965
SMc00789
SMc00790: SMc00790 - peptide ABC transporter ATP-binding protein, at 811,962 to 812,789
SMc00790
SMc00791: SMc00791 - hypothetical protein, at 812,854 to 813,198
SMc00791
SMc00792: SMc00792 - hypothetical protein, at 813,351 to 813,521
SMc00792
SMc00793: SMc00793 - permease, at 813,623 to 814,753
SMc00793
Position (kb) 811
812
813 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 811.028 kb on + strand at 811.028 kb on + strand at 811.084 kb on + strand at 811.085 kb on - strand at 811.085 kb on - strand at 811.334 kb on + strand, within SMc00789 at 811.463 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.467 kb on + strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.468 kb on - strand, within SMc00789 at 811.523 kb on + strand, within SMc00789 at 811.747 kb on - strand, within SMc00789 at 811.855 kb on + strand, within SMc00789 at 812.001 kb on + strand at 812.059 kb on + strand, within SMc00790 at 812.059 kb on + strand, within SMc00790 at 812.123 kb on + strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.124 kb on - strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.400 kb on + strand, within SMc00790 at 812.524 kb on + strand, within SMc00790 at 812.525 kb on - strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.580 kb on + strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.581 kb on - strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.616 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.632 kb on + strand, within SMc00790 at 812.633 kb on - strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.643 kb on + strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.644 kb on - strand, within SMc00790 at 812.664 kb on + strand, within SMc00790 at 812.665 kb on - strand, within SMc00790 at 812.707 kb on - strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.708 kb on + strand at 812.709 kb on - strand at 812.709 kb on - strand at 812.797 kb on + strand at 812.797 kb on + strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.798 kb on - strand at 812.801 kb on + strand at 812.801 kb on + strand at 812.838 kb on + strand at 812.839 kb on - strand at 812.905 kb on + strand, within SMc00791 at 812.905 kb on + strand, within SMc00791 at 813.164 kb on - strand at 813.218 kb on + strand at 813.219 kb on - strand at 813.219 kb on - strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.220 kb on + strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.221 kb on - strand at 813.278 kb on - strand at 813.321 kb on - strand at 813.357 kb on + strand at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.401 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.445 kb on - strand, within SMc00792 at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.614 kb on + strand at 813.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 811,028 + +0.8 811,028 + +1.2 811,084 + -2.5 811,085 - +0.5 811,085 - -2.4 811,334 + SMc00789 0.26 +0.5 811,463 + SMc00789 0.41 -0.5 811,467 + SMc00789 0.42 +0.6 811,467 + SMc00789 0.42 +0.0 811,467 + SMc00789 0.42 +0.3 811,468 - SMc00789 0.42 -1.3 811,468 - SMc00789 0.42 -0.5 811,468 - SMc00789 0.42 +0.7 811,468 - SMc00789 0.42 -0.5 811,523 + SMc00789 0.48 +1.9 811,747 - SMc00789 0.74 +2.5 811,855 + SMc00789 0.87 -0.3 812,001 + +0.2 812,059 + SMc00790 0.12 +0.7 812,059 + SMc00790 0.12 -0.4 812,123 + SMc00790 0.19 +1.0 812,124 - SMc00790 0.20 +0.4 812,124 - SMc00790 0.20 +0.3 812,400 + SMc00790 0.53 +0.7 812,400 + SMc00790 0.53 +2.3 812,524 + SMc00790 0.68 -0.0 812,525 - SMc00790 0.68 +1.3 812,580 + SMc00790 0.75 +1.3 812,580 + SMc00790 0.75 +0.3 812,580 + SMc00790 0.75 +0.3 812,581 - SMc00790 0.75 +0.6 812,581 - SMc00790 0.75 -0.8 812,581 - SMc00790 0.75 +0.1 812,581 - SMc00790 0.75 -0.5 812,581 - SMc00790 0.75 +0.1 812,581 - SMc00790 0.75 +0.9 812,616 + SMc00790 0.79 -0.4 812,616 + SMc00790 0.79 +1.0 812,616 + SMc00790 0.79 +0.4 812,632 + SMc00790 0.81 +0.5 812,632 + SMc00790 0.81 -1.0 812,633 - SMc00790 0.81 -0.1 812,643 + SMc00790 0.82 -2.3 812,643 + SMc00790 0.82 -0.3 812,644 - SMc00790 0.82 +2.2 812,644 - SMc00790 0.82 -0.5 812,644 - SMc00790 0.82 -0.3 812,664 + SMc00790 0.85 +1.1 812,665 - SMc00790 0.85 +0.8 812,707 - +0.9 812,708 + +0.3 812,708 + +0.2 812,708 + +0.4 812,709 - -0.1 812,709 - +1.3 812,797 + -0.1 812,797 + +0.6 812,798 - +1.1 812,798 - +1.3 812,798 - +0.6 812,798 - +1.5 812,798 - +0.7 812,801 + +0.8 812,801 + +0.2 812,838 + +1.6 812,839 - -2.5 812,905 + SMc00791 0.15 -1.7 812,905 + SMc00791 0.15 -2.4 813,164 - +0.3 813,218 + +2.1 813,219 - +2.6 813,219 - -0.6 813,220 + +0.1 813,220 + +0.3 813,220 + +0.6 813,220 + -0.7 813,220 + +0.8 813,221 - -2.3 813,221 - -0.1 813,221 - +1.3 813,221 - +3.0 813,278 - +2.5 813,321 - +0.1 813,357 + -1.9 813,401 - SMc00792 0.29 +0.5 813,401 - SMc00792 0.29 -0.4 813,401 - SMc00792 0.29 +0.5 813,445 - SMc00792 0.55 -0.2 813,445 - SMc00792 0.55 -0.1 813,445 - SMc00792 0.55 -0.3 813,614 + -0.2 813,614 + -0.7 813,614 + -0.2 813,614 + -1.1 813,614 + -0.2 813,615 - +2.4
Or see this region's nucleotide sequence