Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00519 and SMc00518 overlap by 4 nucleotides SMc00518 and SMc00517 are separated by 3 nucleotides SMc00517 and SMc00516 are separated by 55 nucleotides
SMc00519: SMc00519 - hypothetical protein, at 1,894,093 to 1,895,709
SMc00519
SMc00518: SMc00518 - hypothetical protein, at 1,895,706 to 1,896,413
SMc00518
SMc00517: SMc00517 - hypothetical protein, at 1,896,417 to 1,896,749
SMc00517
SMc00516: SMc00516 - hypothetical protein, at 1,896,805 to 1,898,067
SMc00516
Position (kb)
1895
1896
1897 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1894.777 kb on - strand, within SMc00519 at 1894.945 kb on + strand, within SMc00519 at 1894.946 kb on - strand, within SMc00519 at 1895.076 kb on + strand, within SMc00519 at 1895.079 kb on + strand, within SMc00519 at 1895.080 kb on - strand, within SMc00519 at 1895.160 kb on + strand, within SMc00519 at 1895.161 kb on - strand, within SMc00519 at 1895.380 kb on + strand, within SMc00519 at 1895.380 kb on + strand, within SMc00519 at 1895.380 kb on + strand, within SMc00519 at 1895.382 kb on + strand, within SMc00519 at 1895.382 kb on + strand, within SMc00519 at 1895.382 kb on + strand, within SMc00519 at 1895.436 kb on + strand at 1895.436 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.441 kb on + strand, within SMc00519 at 1895.442 kb on - strand, within SMc00519 at 1895.442 kb on - strand, within SMc00519 at 1895.442 kb on - strand, within SMc00519 at 1895.506 kb on + strand, within SMc00519 at 1895.506 kb on + strand, within SMc00519 at 1895.507 kb on - strand, within SMc00519 at 1895.507 kb on - strand, within SMc00519 at 1895.808 kb on + strand, within SMc00518 at 1895.808 kb on + strand, within SMc00518 at 1895.808 kb on + strand, within SMc00518 at 1895.808 kb on + strand, within SMc00518 at 1895.808 kb on + strand, within SMc00518 at 1895.809 kb on - strand, within SMc00518 at 1895.809 kb on - strand, within SMc00518 at 1895.811 kb on - strand, within SMc00518 at 1895.834 kb on + strand at 1895.834 kb on + strand, within SMc00518 at 1895.835 kb on - strand, within SMc00518 at 1895.923 kb on + strand, within SMc00518 at 1895.923 kb on + strand, within SMc00518 at 1895.923 kb on + strand, within SMc00518 at 1895.923 kb on + strand, within SMc00518 at 1895.924 kb on - strand, within SMc00518 at 1895.924 kb on - strand, within SMc00518 at 1895.924 kb on - strand, within SMc00518 at 1895.960 kb on - strand, within SMc00518 at 1896.003 kb on - strand, within SMc00518 at 1896.005 kb on - strand, within SMc00518 at 1896.185 kb on + strand, within SMc00518 at 1896.390 kb on + strand at 1896.391 kb on - strand at 1896.439 kb on + strand at 1896.440 kb on - strand at 1897.087 kb on - strand, within SMc00516 at 1897.305 kb on + strand, within SMc00516 at 1897.305 kb on + strand, within SMc00516 at 1897.306 kb on - strand, within SMc00516 at 1897.306 kb on - strand, within SMc00516 at 1897.354 kb on + strand, within SMc00516 at 1897.362 kb on + strand, within SMc00516 at 1897.364 kb on + strand, within SMc00516 at 1897.365 kb on - strand, within SMc00516 at 1897.365 kb on - strand, within SMc00516
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,894,777 - SMc00519 0.42 +0.3 1,894,945 + SMc00519 0.53 +0.1 1,894,946 - SMc00519 0.53 -0.3 1,895,076 + SMc00519 0.61 -0.3 1,895,079 + SMc00519 0.61 -1.9 1,895,080 - SMc00519 0.61 -0.6 1,895,160 + SMc00519 0.66 -0.3 1,895,161 - SMc00519 0.66 -1.5 1,895,380 + SMc00519 0.80 +0.5 1,895,380 + SMc00519 0.80 +1.2 1,895,380 + SMc00519 0.80 -0.9 1,895,382 + SMc00519 0.80 +1.8 1,895,382 + SMc00519 0.80 -0.1 1,895,382 + SMc00519 0.80 +0.3 1,895,436 + +1.8 1,895,436 + SMc00519 0.83 +0.7 1,895,441 + SMc00519 0.83 -1.2 1,895,441 + SMc00519 0.83 -2.1 1,895,441 + SMc00519 0.83 -1.7 1,895,441 + SMc00519 0.83 -2.5 1,895,441 + SMc00519 0.83 -0.0 1,895,441 + SMc00519 0.83 +1.1 1,895,441 + SMc00519 0.83 -1.1 1,895,442 - SMc00519 0.83 -1.8 1,895,442 - SMc00519 0.83 -0.4 1,895,442 - SMc00519 0.83 -0.1 1,895,506 + SMc00519 0.87 +1.6 1,895,506 + SMc00519 0.87 +2.3 1,895,507 - SMc00519 0.87 -0.3 1,895,507 - SMc00519 0.87 -0.1 1,895,808 + SMc00518 0.14 -0.9 1,895,808 + SMc00518 0.14 +0.1 1,895,808 + SMc00518 0.14 +0.4 1,895,808 + SMc00518 0.14 +0.1 1,895,808 + SMc00518 0.14 -1.9 1,895,809 - SMc00518 0.15 +0.2 1,895,809 - SMc00518 0.15 -0.8 1,895,811 - SMc00518 0.15 -0.5 1,895,834 + +3.3 1,895,834 + SMc00518 0.18 +0.1 1,895,835 - SMc00518 0.18 -0.4 1,895,923 + SMc00518 0.31 -0.4 1,895,923 + SMc00518 0.31 -0.4 1,895,923 + SMc00518 0.31 -0.3 1,895,923 + SMc00518 0.31 +1.7 1,895,924 - SMc00518 0.31 -0.8 1,895,924 - SMc00518 0.31 +1.1 1,895,924 - SMc00518 0.31 -1.5 1,895,960 - SMc00518 0.36 -1.4 1,896,003 - SMc00518 0.42 -0.8 1,896,005 - SMc00518 0.42 -0.1 1,896,185 + SMc00518 0.68 -0.7 1,896,390 + +1.1 1,896,391 - -2.3 1,896,439 + -1.9 1,896,440 - +1.5 1,897,087 - SMc00516 0.22 -1.3 1,897,305 + SMc00516 0.40 -0.7 1,897,305 + SMc00516 0.40 -0.8 1,897,306 - SMc00516 0.40 -1.6 1,897,306 - SMc00516 0.40 +0.3 1,897,354 + SMc00516 0.43 +0.4 1,897,362 + SMc00516 0.44 -0.9 1,897,364 + SMc00516 0.44 +0.2 1,897,365 - SMc00516 0.44 +0.7 1,897,365 - SMc00516 0.44 -0.7
Or see this region's nucleotide sequence