Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00760 and SMc00473 are separated by 333 nucleotides SMc00473 and SMc00472 are separated by 138 nucleotides
SMc00760: SMc00760 - recombinase A, at 1,948,178 to 1,949,263
SMc00760
SMc00473: SMc00473 - carbohydrate kinase, at 1,949,597 to 1,950,556
SMc00473
SMc00472: SMc00472 - hypothetical protein, at 1,950,695 to 1,951,627
SMc00472
Position (kb)
1949
1950
1951 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1948.923 kb on + strand, within SMc00760 at 1948.923 kb on + strand, within SMc00760 at 1949.037 kb on + strand, within SMc00760 at 1949.038 kb on - strand, within SMc00760 at 1949.038 kb on - strand, within SMc00760 at 1949.129 kb on + strand, within SMc00760 at 1949.275 kb on + strand at 1949.275 kb on + strand at 1949.276 kb on - strand at 1949.276 kb on - strand at 1949.422 kb on + strand at 1949.422 kb on + strand at 1949.521 kb on - strand at 1949.521 kb on - strand at 1949.533 kb on + strand at 1949.533 kb on + strand at 1949.533 kb on + strand at 1949.647 kb on + strand at 1949.891 kb on + strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.892 kb on - strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.893 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.951 kb on + strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473 at 1949.952 kb on - strand, within SMc00473 at 1950.325 kb on + strand, within SMc00473 at 1950.603 kb on + strand at 1950.732 kb on - strand at 1950.732 kb on - strand at 1950.815 kb on + strand, within SMc00472 at 1950.914 kb on - strand, within SMc00472 at 1951.128 kb on + strand, within SMc00472 at 1951.129 kb on - strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.253 kb on + strand, within SMc00472 at 1951.254 kb on - strand, within SMc00472 at 1951.408 kb on - strand, within SMc00472 at 1951.442 kb on + strand, within SMc00472 at 1951.442 kb on + strand, within SMc00472 at 1951.443 kb on - strand, within SMc00472 at 1951.443 kb on - strand, within SMc00472
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,948,923 + SMc00760 0.69 -2.0 1,948,923 + SMc00760 0.69 -2.5 1,949,037 + SMc00760 0.79 -1.7 1,949,038 - SMc00760 0.79 -3.3 1,949,038 - SMc00760 0.79 -4.3 1,949,129 + SMc00760 0.88 -3.6 1,949,275 + -1.2 1,949,275 + -1.2 1,949,276 - -2.4 1,949,276 - -1.3 1,949,422 + -0.6 1,949,422 + -0.4 1,949,521 - +0.2 1,949,521 - +0.1 1,949,533 + -0.4 1,949,533 + -0.6 1,949,533 + +0.1 1,949,647 + -1.1 1,949,891 + SMc00473 0.31 -1.1 1,949,892 - SMc00473 0.31 -0.1 1,949,892 - SMc00473 0.31 -0.7 1,949,893 + SMc00473 0.31 -0.2 1,949,893 + SMc00473 0.31 +0.3 1,949,893 + SMc00473 0.31 -0.2 1,949,951 + SMc00473 0.37 -1.1 1,949,951 + SMc00473 0.37 +1.1 1,949,952 - SMc00473 0.37 +0.4 1,949,952 - SMc00473 0.37 +0.6 1,950,325 + SMc00473 0.76 -0.0 1,950,603 + -0.7 1,950,732 - -1.0 1,950,732 - +1.0 1,950,815 + SMc00472 0.13 -0.3 1,950,914 - SMc00472 0.23 -0.2 1,951,128 + SMc00472 0.46 -0.2 1,951,129 - SMc00472 0.47 -2.7 1,951,253 + SMc00472 0.60 -0.7 1,951,253 + SMc00472 0.60 +0.2 1,951,253 + SMc00472 0.60 -0.5 1,951,253 + SMc00472 0.60 -0.1 1,951,254 - SMc00472 0.60 -1.7 1,951,408 - SMc00472 0.76 -0.0 1,951,442 + SMc00472 0.80 +2.0 1,951,442 + SMc00472 0.80 +0.9 1,951,443 - SMc00472 0.80 -0.5 1,951,443 - SMc00472 0.80 +0.0
Or see this region's nucleotide sequence