Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00467 and SMc00466 overlap by 4 nucleotides SMc00466 and SMc00548 are separated by 134 nucleotides SMc00548 and SMc00465 are separated by 39 nucleotides
SMc00467: SMc00467 - hypothetical protein, at 1,957,621 to 1,959,120
SMc00467
SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196
SMc00466
SMc00548: SMc00548 - signal peptide protein, at 1,960,331 to 1,960,882
SMc00548
SMc00465: SMc00465 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, at 1,960,922 to 1,961,446
SMc00465
Position (kb)
1959
1960
1961 Strain fitness (log2 ratio)
-2
-1
0
1 at 1958.236 kb on + strand, within SMc00467 at 1958.237 kb on - strand, within SMc00467 at 1958.407 kb on + strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.417 kb on - strand, within SMc00467 at 1958.433 kb on - strand, within SMc00467 at 1959.230 kb on + strand, within SMc00466 at 1959.450 kb on + strand, within SMc00466 at 1959.846 kb on + strand, within SMc00466 at 1959.847 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466 at 1959.886 kb on - strand, within SMc00466 at 1960.880 kb on + strand at 1960.923 kb on + strand at 1960.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,958,236 + SMc00467 0.41 +1.1 1,958,237 - SMc00467 0.41 -0.4 1,958,407 + SMc00467 0.52 -1.2 1,958,417 - SMc00467 0.53 -0.4 1,958,417 - SMc00467 0.53 +0.1 1,958,433 - SMc00467 0.54 -0.7 1,959,230 + SMc00466 0.10 -0.9 1,959,450 + SMc00466 0.31 -1.7 1,959,846 + SMc00466 0.68 -2.0 1,959,847 - SMc00466 0.68 -1.4 1,959,886 - SMc00466 0.71 -0.1 1,959,886 - SMc00466 0.71 -0.5 1,960,880 + -1.0 1,960,923 + -0.1 1,960,923 + +0.6
Or see this region's nucleotide sequence