Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00430 and SMc00431 are separated by 4 nucleotides SMc00431 and SMc00432 are separated by 76 nucleotides
SMc00430: SMc00430 - oxidoreductase, at 378,451 to 379,434
SMc00430
SMc00431: SMc00431 - hypothetical protein, at 379,439 to 379,843
SMc00431
SMc00432: SMc00432 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 379,920 to 380,720
SMc00432
Position (kb) 379
380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 378.459 kb on - strand at 378.862 kb on + strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 378.863 kb on - strand, within SMc00430 at 379.217 kb on - strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.390 kb on + strand at 379.391 kb on - strand at 379.407 kb on + strand at 379.542 kb on - strand, within SMc00431 at 379.665 kb on + strand, within SMc00431 at 379.666 kb on - strand, within SMc00431 at 379.875 kb on + strand at 379.876 kb on - strand at 379.876 kb on - strand at 380.002 kb on + strand, within SMc00432 at 380.003 kb on - strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.006 kb on - strand, within SMc00432 at 380.041 kb on + strand, within SMc00432 at 380.042 kb on - strand, within SMc00432 at 380.061 kb on + strand, within SMc00432 at 380.062 kb on - strand, within SMc00432 at 380.113 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.159 kb on - strand, within SMc00432 at 380.161 kb on + strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.311 kb on + strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.465 kb on - strand, within SMc00432 at 380.642 kb on - strand at 380.642 kb on - strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.820 kb on + strand at 380.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 378,459 - -0.2 378,862 + SMc00430 0.42 -0.3 378,863 - SMc00430 0.42 +1.4 378,863 - SMc00430 0.42 -0.3 378,863 - SMc00430 0.42 -2.6 378,863 - SMc00430 0.42 -0.3 379,217 - SMc00430 0.78 -0.1 379,261 + SMc00430 0.82 -0.5 379,261 + SMc00430 0.82 +0.1 379,261 + SMc00430 0.82 -1.9 379,261 + SMc00430 0.82 -0.3 379,261 + SMc00430 0.82 +0.3 379,262 - SMc00430 0.82 +0.2 379,262 - SMc00430 0.82 +0.1 379,262 - SMc00430 0.82 -0.6 379,390 + -2.4 379,391 - -1.7 379,407 + +0.6 379,542 - SMc00431 0.25 -1.8 379,665 + SMc00431 0.56 -0.1 379,666 - SMc00431 0.56 +0.5 379,875 + +0.5 379,876 - +0.8 379,876 - -0.4 380,002 + SMc00432 0.10 +0.8 380,003 - SMc00432 0.10 -0.7 380,005 + SMc00432 0.11 -0.2 380,005 + SMc00432 0.11 -0.2 380,005 + SMc00432 0.11 -1.4 380,006 - SMc00432 0.11 -4.2 380,041 + SMc00432 0.15 +0.3 380,042 - SMc00432 0.15 -1.1 380,061 + SMc00432 0.18 +0.1 380,062 - SMc00432 0.18 +1.0 380,113 + SMc00432 0.24 +0.1 380,158 + SMc00432 0.30 -2.9 380,158 + +3.0 380,158 + SMc00432 0.30 +2.4 380,158 + SMc00432 0.30 +0.0 380,159 - SMc00432 0.30 +0.2 380,161 + SMc00432 0.30 -1.3 380,162 - SMc00432 0.30 -0.6 380,162 - SMc00432 0.30 +0.0 380,162 - SMc00432 0.30 -0.2 380,162 - SMc00432 0.30 -0.9 380,162 - SMc00432 0.30 -0.7 380,176 + SMc00432 0.32 +0.7 380,176 + SMc00432 0.32 -1.9 380,311 + SMc00432 0.49 +1.6 380,312 - SMc00432 0.49 +1.2 380,312 - SMc00432 0.49 -0.4 380,464 + SMc00432 0.68 -1.3 380,464 + SMc00432 0.68 -0.5 380,465 - SMc00432 0.68 -0.1 380,642 - -0.0 380,642 - -1.6 380,722 + +0.4 380,722 + -0.9 380,722 + +1.2 380,722 + +0.3 380,722 + -2.0 380,722 + +0.1 380,722 + +1.2 380,723 - +1.2 380,723 - +0.6 380,723 - +1.0 380,820 + +0.6 380,821 - -2.5
Or see this region's nucleotide sequence