Strain Fitness in Sinorhizobium meliloti 1021 around SMc00099
Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.0005 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,057,106 | + | SMc00098 | 0.24 | -0.2 | |
1,057,198 | + | SMc00098 | 0.43 | -2.7 | |
1,057,318 | + | SMc00098 | 0.68 | -0.4 | |
1,057,318 | + | SMc00098 | 0.68 | +1.1 | |
1,057,319 | - | SMc00098 | 0.68 | -0.4 | |
1,057,360 | + | SMc00098 | 0.77 | -0.4 | |
1,057,361 | - | SMc00098 | 0.77 | -0.1 | |
1,057,361 | - | SMc00098 | 0.77 | +0.2 | |
1,057,390 | + | SMc00098 | 0.83 | -2.8 | |
1,057,599 | - | +1.5 | |||
1,057,738 | - | SMc00040 | 0.38 | -1.4 | |
1,057,789 | + | SMc00040 | 0.50 | +0.1 | |
1,057,790 | - | SMc00040 | 0.50 | -0.3 | |
1,057,790 | - | SMc00040 | 0.50 | +0.4 | |
1,057,862 | + | SMc00040 | 0.67 | +0.5 | |
1,057,937 | + | SMc00040 | 0.85 | -1.2 | |
1,057,937 | + | SMc00040 | 0.85 | +0.2 | |
1,057,938 | - | SMc00040 | 0.85 | -0.2 | |
1,057,950 | + | SMc00040 | 0.88 | +0.0 | |
1,057,950 | + | SMc00040 | 0.88 | +0.1 | |
1,057,982 | + | -0.2 | |||
1,057,982 | + | +0.5 | |||
1,057,982 | + | -2.1 | |||
1,058,235 | + | SMc00099 | 0.65 | -1.8 | |
1,058,235 | + | SMc00099 | 0.65 | -0.7 | |
1,058,319 | + | -0.4 | |||
1,058,427 | + | -2.5 | |||
1,058,428 | - | +0.4 | |||
1,058,521 | + | SMc00100 | 0.13 | -1.1 | |
1,058,936 | + | SMc00100 | 0.40 | -0.9 |
Or see this region's nucleotide sequence