Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2089 and SMa2091 overlap by 10 nucleotides SMa2091 and SMa2093 are separated by 9 nucleotides SMa2093 and SMa2095 overlap by 4 nucleotides SMa2095 and SMa2097 overlap by 4 nucleotides
SMa2089: SMa2089 - hypothetical protein, at 1,179,416 to 1,179,769
SMa2089
SMa2091: SMa2091 - hypothetical protein, at 1,179,760 to 1,180,647
SMa2091
SMa2093: SMa2093 - desulfurization enzyme, at 1,180,657 to 1,181,691
SMa2093
SMa2095: SMa2095 - hypothetical protein, at 1,181,688 to 1,182,566
SMa2095
SMa2097: SMa2097 - oxidoreductase, at 1,182,563 to 1,183,813
SMa2097
Position (kb)
1180
1181
1182 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1179.677 kb on + strand, within SMa2089 at 1179.677 kb on + strand, within SMa2089 at 1179.880 kb on + strand, within SMa2091 at 1179.881 kb on - strand, within SMa2091 at 1180.162 kb on + strand, within SMa2091 at 1180.206 kb on + strand, within SMa2091 at 1180.818 kb on + strand, within SMa2093 at 1180.819 kb on - strand, within SMa2093 at 1180.904 kb on + strand, within SMa2093 at 1180.911 kb on - strand, within SMa2093 at 1180.911 kb on - strand, within SMa2093 at 1180.940 kb on + strand, within SMa2093 at 1180.941 kb on - strand, within SMa2093 at 1181.454 kb on + strand, within SMa2093 at 1181.454 kb on + strand, within SMa2093 at 1182.034 kb on - strand, within SMa2095 at 1182.154 kb on + strand, within SMa2095 at 1182.155 kb on - strand, within SMa2095 at 1182.204 kb on + strand, within SMa2095 at 1182.428 kb on - strand, within SMa2095 at 1182.520 kb on + strand at 1182.520 kb on + strand at 1182.570 kb on + strand at 1182.571 kb on - strand at 1182.689 kb on + strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097 at 1182.690 kb on - strand, within SMa2097
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,179,677 + SMa2089 0.74 +0.1 1,179,677 + SMa2089 0.74 -0.2 1,179,880 + SMa2091 0.14 -1.3 1,179,881 - SMa2091 0.14 +0.0 1,180,162 + SMa2091 0.45 -0.3 1,180,206 + SMa2091 0.50 +0.2 1,180,818 + SMa2093 0.16 +0.0 1,180,819 - SMa2093 0.16 +0.3 1,180,904 + SMa2093 0.24 +0.3 1,180,911 - SMa2093 0.25 +0.2 1,180,911 - SMa2093 0.25 -2.7 1,180,940 + SMa2093 0.27 +2.4 1,180,941 - SMa2093 0.27 -1.3 1,181,454 + SMa2093 0.77 -0.2 1,181,454 + SMa2093 0.77 -0.7 1,182,034 - SMa2095 0.39 -1.9 1,182,154 + SMa2095 0.53 -1.3 1,182,155 - SMa2095 0.53 -1.6 1,182,204 + SMa2095 0.59 -3.2 1,182,428 - SMa2095 0.84 -0.5 1,182,520 + -0.9 1,182,520 + -0.6 1,182,570 + +1.1 1,182,571 - -0.4 1,182,689 + SMa2097 0.10 -0.3 1,182,690 - SMa2097 0.10 -1.9 1,182,690 - SMa2097 0.10 -0.2 1,182,690 - SMa2097 0.10 -0.6
Or see this region's nucleotide sequence