Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1862 and SMa1863 overlap by 4 nucleotides SMa1863 and SMa1864 overlap by 1 nucleotides SMa1864 and SMa1867 are separated by 108 nucleotides SMa1867 and SMa1869 are separated by 235 nucleotides
SMa1862: SMa1862 - ABC transporter permease, at 1,056,637 to 1,057,587
SMa1862
SMa1863: SMa1863 - ABC transporter permease, at 1,057,584 to 1,058,447
SMa1863
SMa1864: SMa1864 - ABC transporter ATP-binding protein, at 1,058,447 to 1,060,102
SMa1864
SMa1867: SMa1867 - AsnC family transcriptional regulator, at 1,060,211 to 1,060,687
SMa1867
SMa1869: SMa1869 - deaminase, at 1,060,923 to 1,062,248
SMa1869
Position (kb)
1058
1059
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1057.580 kb on + strand at 1057.581 kb on - strand at 1057.652 kb on + strand at 1057.800 kb on + strand, within SMa1863 at 1057.846 kb on - strand, within SMa1863 at 1058.061 kb on + strand, within SMa1863 at 1058.061 kb on + strand, within SMa1863 at 1058.061 kb on + strand, within SMa1863 at 1058.061 kb on + strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.062 kb on - strand, within SMa1863 at 1058.126 kb on + strand, within SMa1863 at 1058.127 kb on - strand, within SMa1863 at 1058.160 kb on + strand, within SMa1863 at 1058.289 kb on + strand, within SMa1863 at 1058.511 kb on + strand at 1058.512 kb on - strand at 1058.512 kb on - strand at 1058.567 kb on - strand at 1058.729 kb on + strand, within SMa1864 at 1058.729 kb on + strand, within SMa1864 at 1058.815 kb on + strand, within SMa1864 at 1058.815 kb on + strand, within SMa1864 at 1058.815 kb on + strand, within SMa1864 at 1058.816 kb on - strand, within SMa1864 at 1059.009 kb on + strand, within SMa1864 at 1059.010 kb on - strand, within SMa1864 at 1059.030 kb on + strand at 1059.031 kb on - strand, within SMa1864 at 1059.077 kb on + strand, within SMa1864 at 1059.077 kb on + strand, within SMa1864 at 1059.121 kb on + strand, within SMa1864 at 1059.121 kb on + strand, within SMa1864 at 1059.147 kb on + strand, within SMa1864 at 1059.147 kb on + strand, within SMa1864 at 1059.199 kb on + strand, within SMa1864 at 1059.200 kb on - strand, within SMa1864 at 1059.200 kb on - strand, within SMa1864 at 1059.372 kb on - strand, within SMa1864 at 1059.447 kb on + strand, within SMa1864 at 1059.555 kb on - strand, within SMa1864 at 1059.620 kb on + strand, within SMa1864 at 1059.620 kb on + strand, within SMa1864 at 1059.621 kb on - strand, within SMa1864 at 1059.879 kb on - strand, within SMa1864 at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.941 kb on + strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.942 kb on - strand at 1059.982 kb on + strand at 1060.001 kb on + strand at 1060.001 kb on + strand at 1060.002 kb on - strand at 1060.088 kb on + strand at 1060.089 kb on - strand at 1060.147 kb on - strand at 1060.147 kb on - strand at 1060.284 kb on + strand, within SMa1867 at 1060.335 kb on + strand, within SMa1867 at 1060.372 kb on - strand, within SMa1867 at 1060.378 kb on - strand, within SMa1867 at 1060.378 kb on - strand, within SMa1867 at 1060.533 kb on + strand, within SMa1867 at 1060.543 kb on + strand, within SMa1867 at 1060.544 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.546 kb on - strand, within SMa1867 at 1060.762 kb on - strand at 1061.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,057,580 + -1.6 1,057,581 - -0.5 1,057,652 + -1.4 1,057,800 + SMa1863 0.25 +1.2 1,057,846 - SMa1863 0.30 -2.8 1,058,061 + SMa1863 0.55 +0.4 1,058,061 + SMa1863 0.55 -1.4 1,058,061 + SMa1863 0.55 -0.2 1,058,061 + SMa1863 0.55 -0.1 1,058,062 - SMa1863 0.55 +1.4 1,058,062 - SMa1863 0.55 -0.1 1,058,062 - SMa1863 0.55 -1.9 1,058,062 - SMa1863 0.55 -2.9 1,058,062 - SMa1863 0.55 +0.6 1,058,062 - SMa1863 0.55 +0.2 1,058,062 - SMa1863 0.55 +0.3 1,058,126 + SMa1863 0.63 +0.3 1,058,127 - SMa1863 0.63 +0.1 1,058,160 + SMa1863 0.67 +1.2 1,058,289 + SMa1863 0.82 -2.2 1,058,511 + +0.7 1,058,512 - -0.9 1,058,512 - +0.7 1,058,567 - -0.4 1,058,729 + SMa1864 0.17 +0.4 1,058,729 + SMa1864 0.17 +0.2 1,058,815 + SMa1864 0.22 -0.4 1,058,815 + SMa1864 0.22 -0.4 1,058,815 + SMa1864 0.22 -1.1 1,058,816 - SMa1864 0.22 +1.2 1,059,009 + SMa1864 0.34 -0.1 1,059,010 - SMa1864 0.34 -0.9 1,059,030 + +2.2 1,059,031 - SMa1864 0.35 +1.6 1,059,077 + SMa1864 0.38 +1.2 1,059,077 + SMa1864 0.38 +1.1 1,059,121 + SMa1864 0.41 +0.6 1,059,121 + SMa1864 0.41 -1.9 1,059,147 + SMa1864 0.42 -0.6 1,059,147 + SMa1864 0.42 +1.1 1,059,199 + SMa1864 0.45 -0.1 1,059,200 - SMa1864 0.45 +0.5 1,059,200 - SMa1864 0.45 -1.4 1,059,372 - SMa1864 0.56 +1.3 1,059,447 + SMa1864 0.60 -0.6 1,059,555 - SMa1864 0.67 +0.4 1,059,620 + SMa1864 0.71 +0.4 1,059,620 + SMa1864 0.71 -1.3 1,059,621 - SMa1864 0.71 -1.8 1,059,879 - SMa1864 0.86 +0.0 1,059,941 + -0.1 1,059,941 + -1.0 1,059,941 + -0.6 1,059,941 + +0.5 1,059,942 - +1.0 1,059,942 - +0.7 1,059,942 - -0.9 1,059,942 - -0.2 1,059,982 + +0.4 1,060,001 + +0.5 1,060,001 + +1.1 1,060,002 - +0.6 1,060,088 + -0.1 1,060,089 - -1.2 1,060,147 - -0.6 1,060,147 - +2.0 1,060,284 + SMa1867 0.15 +0.2 1,060,335 + SMa1867 0.26 -0.9 1,060,372 - SMa1867 0.34 -1.6 1,060,378 - SMa1867 0.35 +0.1 1,060,378 - SMa1867 0.35 -0.1 1,060,533 + SMa1867 0.68 +0.8 1,060,543 + SMa1867 0.70 -0.4 1,060,544 - SMa1867 0.70 -0.2 1,060,546 - SMa1867 0.70 -0.8 1,060,546 - SMa1867 0.70 +0.6 1,060,546 - SMa1867 0.70 -0.4 1,060,762 - -1.5 1,061,023 - -1.9
Or see this region's nucleotide sequence