Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1683 and SMa1684 are separated by 336 nucleotides SMa1684 and SMa1686 overlap by 8 nucleotides SMa1686 and SMa1688 are separated by 81 nucleotides
SMa1683: SMa1683 - arylsulfatase, at 946,966 to 948,633
SMa1683
SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853
SMa1684
SMa1686: SMa1686 - Two-component response regulator, at 950,846 to 951,487
SMa1686
SMa1688: SMa1688 - Two-component response regulator, at 951,569 to 951,985
SMa1688
Position (kb) 948
949
950
951 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 947.992 kb on - strand, within SMa1683 at 947.992 kb on - strand, within SMa1683 at 947.999 kb on + strand, within SMa1683 at 948.128 kb on + strand, within SMa1683 at 948.128 kb on + strand, within SMa1683 at 948.129 kb on - strand, within SMa1683 at 948.129 kb on - strand, within SMa1683 at 948.129 kb on - strand, within SMa1683 at 948.134 kb on + strand, within SMa1683 at 948.134 kb on + strand, within SMa1683 at 948.135 kb on - strand, within SMa1683 at 948.135 kb on - strand, within SMa1683 at 948.135 kb on - strand, within SMa1683 at 948.135 kb on - strand, within SMa1683 at 948.150 kb on - strand, within SMa1683 at 948.162 kb on - strand, within SMa1683 at 948.201 kb on - strand, within SMa1683 at 948.236 kb on + strand, within SMa1683 at 948.237 kb on - strand, within SMa1683 at 948.237 kb on - strand, within SMa1683 at 948.237 kb on - strand, within SMa1683 at 948.398 kb on + strand, within SMa1683 at 948.581 kb on - strand at 948.737 kb on - strand at 948.750 kb on + strand at 948.751 kb on - strand at 948.863 kb on + strand at 948.919 kb on - strand at 948.938 kb on + strand at 948.938 kb on + strand at 949.109 kb on + strand at 949.115 kb on - strand at 949.115 kb on - strand at 949.133 kb on + strand at 949.270 kb on + strand, within SMa1684 at 949.271 kb on - strand, within SMa1684 at 949.271 kb on - strand, within SMa1684 at 949.285 kb on + strand, within SMa1684 at 949.286 kb on - strand, within SMa1684 at 949.286 kb on - strand, within SMa1684 at 949.328 kb on + strand, within SMa1684 at 949.382 kb on + strand, within SMa1684 at 949.466 kb on + strand, within SMa1684 at 949.466 kb on + strand, within SMa1684 at 949.467 kb on - strand, within SMa1684 at 949.601 kb on - strand, within SMa1684 at 949.774 kb on + strand, within SMa1684 at 949.775 kb on - strand, within SMa1684 at 949.793 kb on - strand, within SMa1684 at 949.793 kb on - strand, within SMa1684 at 949.918 kb on + strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 949.919 kb on - strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.020 kb on + strand, within SMa1684 at 950.021 kb on - strand, within SMa1684 at 950.311 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.466 kb on - strand, within SMa1684 at 950.707 kb on + strand at 950.708 kb on - strand at 950.708 kb on - strand at 950.770 kb on + strand at 950.771 kb on - strand at 950.877 kb on + strand at 950.878 kb on - strand at 950.878 kb on - strand at 950.948 kb on + strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 950.949 kb on - strand, within SMa1686 at 951.245 kb on - strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.297 kb on + strand, within SMa1686 at 951.328 kb on + strand, within SMa1686 at 951.489 kb on + strand at 951.489 kb on + strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.490 kb on - strand at 951.543 kb on + strand at 951.621 kb on + strand, within SMa1688 at 951.622 kb on - strand, within SMa1688 at 951.742 kb on - strand, within SMa1688 at 951.777 kb on + strand, within SMa1688 at 951.777 kb on + strand, within SMa1688
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 947,992 - SMa1683 0.62 -2.3 947,992 - SMa1683 0.62 -0.1 947,999 + SMa1683 0.62 +1.3 948,128 + SMa1683 0.70 -0.3 948,128 + SMa1683 0.70 -1.3 948,129 - SMa1683 0.70 -1.5 948,129 - SMa1683 0.70 -0.2 948,129 - SMa1683 0.70 -0.3 948,134 + SMa1683 0.70 +1.4 948,134 + SMa1683 0.70 -1.3 948,135 - SMa1683 0.70 +0.1 948,135 - SMa1683 0.70 +0.9 948,135 - SMa1683 0.70 -2.7 948,135 - SMa1683 0.70 +0.8 948,150 - SMa1683 0.71 +1.6 948,162 - SMa1683 0.72 +0.9 948,201 - SMa1683 0.74 +0.2 948,236 + SMa1683 0.76 +1.2 948,237 - SMa1683 0.76 -0.1 948,237 - SMa1683 0.76 -1.8 948,237 - SMa1683 0.76 -0.8 948,398 + SMa1683 0.86 -0.1 948,581 - +0.5 948,737 - -2.2 948,750 + +1.1 948,751 - -0.9 948,863 + -1.4 948,919 - -0.4 948,938 + +1.8 948,938 + +1.8 949,109 + +0.2 949,115 - -0.3 949,115 - -0.5 949,133 + +1.0 949,270 + SMa1684 0.16 +2.0 949,271 - SMa1684 0.16 +1.0 949,271 - SMa1684 0.16 +0.8 949,285 + SMa1684 0.17 -1.2 949,286 - SMa1684 0.17 -0.2 949,286 - SMa1684 0.17 -0.8 949,328 + SMa1684 0.19 -0.2 949,382 + SMa1684 0.22 +0.9 949,466 + SMa1684 0.26 -2.4 949,466 + SMa1684 0.26 +0.1 949,467 - SMa1684 0.26 -0.4 949,601 - SMa1684 0.33 +0.9 949,774 + SMa1684 0.43 +0.6 949,775 - SMa1684 0.43 -2.1 949,793 - SMa1684 0.44 -0.3 949,793 - SMa1684 0.44 +0.4 949,918 + SMa1684 0.50 +0.2 949,919 - SMa1684 0.50 -1.1 949,919 - SMa1684 0.50 +2.0 950,020 + SMa1684 0.56 -0.5 950,020 + SMa1684 0.56 +2.0 950,021 - SMa1684 0.56 +0.0 950,311 - SMa1684 0.71 -1.8 950,466 - SMa1684 0.79 +0.5 950,466 - SMa1684 0.79 +2.2 950,466 - SMa1684 0.79 +0.7 950,466 - SMa1684 0.79 -0.1 950,707 + +0.3 950,708 - +1.0 950,708 - +0.0 950,770 + +0.7 950,771 - +1.2 950,877 + +0.5 950,878 - +0.5 950,878 - +0.7 950,948 + SMa1686 0.16 -0.8 950,949 - SMa1686 0.16 +0.9 950,949 - SMa1686 0.16 -0.4 951,245 - SMa1686 0.62 -1.0 951,297 + SMa1686 0.70 +0.2 951,297 + SMa1686 0.70 +0.2 951,328 + SMa1686 0.75 -0.3 951,489 + +0.6 951,489 + +1.0 951,490 - -0.1 951,490 - -1.1 951,490 - -2.9 951,543 + -0.6 951,621 + SMa1688 0.12 +0.6 951,622 - SMa1688 0.13 +1.5 951,742 - SMa1688 0.41 -0.6 951,777 + SMa1688 0.50 -0.5 951,777 + SMa1688 0.50 +0.2
Or see this region's nucleotide sequence