Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1646 and SMa1647 overlap by 4 nucleotides SMa1647 and SMa1649 overlap by 11 nucleotides SMa1649 and SMa1650 overlap by 10 nucleotides SMa1650 and SMa1651 are separated by 13 nucleotides
SMa1646: SMa1646 - ABC transporter ATP-binding protein, at 917,367 to 918,389
SMa1646
SMa1647: SMa1647 - ABC transporter ATP-binding protein, at 918,386 to 919,381
SMa1647
SMa1649: SMa1649 - ABC transporter permease, at 919,371 to 920,282
SMa1649
SMa1650: SMa1650 - ABC transporter permease, at 920,273 to 921,208
SMa1650
SMa1651: SMa1651 - ABC transporter substrate-binding protein, at 921,222 to 922,799
SMa1651
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 918.549 kb on - strand, within SMa1647 at 918.549 kb on - strand, within SMa1647 at 918.611 kb on + strand, within SMa1647 at 918.687 kb on + strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.688 kb on - strand, within SMa1647 at 918.884 kb on + strand, within SMa1647 at 918.952 kb on + strand, within SMa1647 at 918.974 kb on + strand, within SMa1647 at 918.975 kb on - strand, within SMa1647 at 918.975 kb on - strand, within SMa1647 at 919.055 kb on + strand, within SMa1647 at 919.136 kb on + strand, within SMa1647 at 919.291 kb on - strand at 919.291 kb on - strand at 919.559 kb on - strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.675 kb on + strand, within SMa1649 at 919.676 kb on - strand, within SMa1649 at 919.676 kb on - strand, within SMa1649 at 919.762 kb on - strand, within SMa1649 at 919.762 kb on - strand, within SMa1649 at 919.764 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.782 kb on - strand, within SMa1649 at 919.844 kb on + strand, within SMa1649 at 919.997 kb on + strand, within SMa1649 at 919.997 kb on + strand, within SMa1649 at 919.998 kb on - strand, within SMa1649 at 919.998 kb on - strand, within SMa1649 at 920.003 kb on + strand, within SMa1649 at 920.004 kb on - strand, within SMa1649 at 920.004 kb on - strand, within SMa1649 at 920.054 kb on + strand, within SMa1649 at 920.262 kb on + strand at 920.263 kb on - strand at 920.419 kb on - strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.636 kb on + strand, within SMa1650 at 920.661 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.743 kb on - strand, within SMa1650 at 920.827 kb on - strand, within SMa1650 at 921.007 kb on - strand, within SMa1650 at 921.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 918,549 - SMa1647 0.16 -2.5 918,549 - SMa1647 0.16 +0.2 918,611 + SMa1647 0.23 +1.1 918,687 + SMa1647 0.30 +0.6 918,688 - SMa1647 0.30 +0.9 918,688 - SMa1647 0.30 -0.5 918,688 - SMa1647 0.30 -0.7 918,884 + SMa1647 0.50 +1.2 918,952 + SMa1647 0.57 -1.4 918,974 + SMa1647 0.59 +1.2 918,975 - SMa1647 0.59 -0.9 918,975 - SMa1647 0.59 -0.0 919,055 + SMa1647 0.67 +0.1 919,136 + SMa1647 0.75 +2.4 919,291 - +0.5 919,291 - -0.3 919,559 - SMa1649 0.21 -0.1 919,675 + SMa1649 0.33 -0.0 919,675 + SMa1649 0.33 -0.3 919,675 + SMa1649 0.33 -0.3 919,676 - SMa1649 0.33 +0.2 919,676 - SMa1649 0.33 +1.1 919,762 - SMa1649 0.43 +0.1 919,762 - SMa1649 0.43 -0.8 919,764 - SMa1649 0.43 +5.1 919,782 - SMa1649 0.45 +2.0 919,782 - SMa1649 0.45 +0.3 919,782 - SMa1649 0.45 -0.5 919,844 + SMa1649 0.52 +0.4 919,997 + SMa1649 0.69 -2.2 919,997 + SMa1649 0.69 +0.4 919,998 - SMa1649 0.69 +0.5 919,998 - SMa1649 0.69 +1.3 920,003 + SMa1649 0.69 +1.9 920,004 - SMa1649 0.69 -0.4 920,004 - SMa1649 0.69 +0.2 920,054 + SMa1649 0.75 +0.4 920,262 + -0.6 920,263 - +0.3 920,419 - SMa1650 0.16 +0.2 920,636 + SMa1650 0.39 -0.4 920,636 + SMa1650 0.39 -0.7 920,661 - SMa1650 0.41 +0.1 920,743 - SMa1650 0.50 -2.1 920,743 - SMa1650 0.50 +0.3 920,743 - SMa1650 0.50 -1.6 920,827 - SMa1650 0.59 -1.2 921,007 - SMa1650 0.78 -0.1 921,260 - -0.8
Or see this region's nucleotide sequence