Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1556 and SMa1558 overlap by 14 nucleotides SMa1558 and SMa1561 are separated by 9 nucleotides
SMa1556: SMa1556 - Methyl-accepting chemotaxis protein, at 860,424 to 862,109
SMa1556
SMa1558: SMa1558 - Sensor histidine kinase, at 862,096 to 864,222
SMa1558
SMa1561: SMa1561 - chemotaxis protein CheB, at 864,232 to 865,296
SMa1561
Position (kb) 862
863
864
865 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 861.444 kb on + strand, within SMa1556 at 861.975 kb on + strand at 861.975 kb on + strand at 861.976 kb on - strand at 861.976 kb on - strand at 861.976 kb on - strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.100 kb on + strand at 862.101 kb on - strand at 862.101 kb on - strand at 862.127 kb on + strand at 862.127 kb on + strand at 862.128 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.245 kb on - strand at 862.258 kb on - strand at 862.258 kb on - strand at 862.350 kb on - strand, within SMa1558 at 862.350 kb on - strand, within SMa1558 at 862.385 kb on + strand, within SMa1558 at 862.962 kb on - strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.290 kb on - strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.345 kb on + strand, within SMa1558 at 863.346 kb on - strand, within SMa1558 at 863.354 kb on + strand, within SMa1558 at 863.355 kb on - strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.508 kb on - strand, within SMa1558 at 863.530 kb on - strand, within SMa1558 at 863.731 kb on + strand, within SMa1558 at 863.893 kb on + strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.917 kb on - strand, within SMa1558 at 863.919 kb on - strand, within SMa1558 at 864.095 kb on + strand at 864.096 kb on - strand at 864.160 kb on + strand at 864.236 kb on + strand at 864.237 kb on - strand at 864.281 kb on + strand at 864.291 kb on + strand at 864.320 kb on + strand at 864.320 kb on + strand at 864.321 kb on - strand at 864.437 kb on + strand, within SMa1561 at 864.438 kb on - strand, within SMa1561 at 864.464 kb on + strand, within SMa1561 at 864.465 kb on - strand, within SMa1561 at 864.626 kb on + strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.969 kb on - strand, within SMa1561 at 865.019 kb on - strand, within SMa1561
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 861,444 + SMa1556 0.60 -1.6 861,975 + +1.8 861,975 + +1.1 861,976 - +0.2 861,976 - -2.7 861,976 - +0.2 862,100 + -0.1 862,100 + +0.8 862,100 + +0.2 862,100 + -0.0 862,101 - -2.6 862,101 - -2.9 862,127 + -0.0 862,127 + -0.8 862,128 - -0.4 862,245 - -0.4 862,245 - +0.1 862,245 - -0.4 862,245 - +0.5 862,258 - +0.7 862,258 - +0.0 862,350 - SMa1558 0.12 +0.9 862,350 - SMa1558 0.12 -2.2 862,385 + SMa1558 0.14 -1.4 862,962 - SMa1558 0.41 +0.6 863,289 + SMa1558 0.56 +0.2 863,289 + SMa1558 0.56 -1.1 863,289 + SMa1558 0.56 -0.3 863,290 - SMa1558 0.56 -3.4 863,291 + SMa1558 0.56 -0.4 863,291 + SMa1558 0.56 +0.1 863,291 + SMa1558 0.56 +0.4 863,291 + SMa1558 0.56 +0.2 863,292 - SMa1558 0.56 +1.1 863,292 - SMa1558 0.56 +0.5 863,292 - SMa1558 0.56 +1.6 863,292 - SMa1558 0.56 +0.2 863,292 - SMa1558 0.56 +0.4 863,292 - SMa1558 0.56 -0.2 863,292 - SMa1558 0.56 +0.3 863,345 + SMa1558 0.59 +0.2 863,346 - SMa1558 0.59 +0.0 863,354 + SMa1558 0.59 +0.8 863,355 - SMa1558 0.59 -2.7 863,507 + SMa1558 0.66 +2.6 863,507 + SMa1558 0.66 -1.9 863,508 - SMa1558 0.66 -1.4 863,530 - SMa1558 0.67 +1.5 863,731 + SMa1558 0.77 -0.0 863,893 + SMa1558 0.84 +0.2 863,894 - SMa1558 0.85 -0.5 863,894 - SMa1558 0.85 -0.8 863,917 - SMa1558 0.86 +2.3 863,919 - SMa1558 0.86 +0.6 864,095 + -0.3 864,096 - -1.5 864,160 + -3.0 864,236 + -0.6 864,237 - -1.4 864,281 + -0.0 864,291 + -0.5 864,320 + +0.3 864,320 + -0.3 864,321 - -0.1 864,437 + SMa1561 0.19 -1.2 864,438 - SMa1561 0.19 -0.2 864,464 + SMa1561 0.22 -0.2 864,465 - SMa1561 0.22 -0.7 864,626 + SMa1561 0.37 -1.3 864,920 - SMa1561 0.65 -0.1 864,920 - SMa1561 0.65 +1.6 864,920 - SMa1561 0.65 -0.3 864,969 - SMa1561 0.69 +1.2 865,019 - SMa1561 0.74 -3.5
Or see this region's nucleotide sequence