Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1485 and SMa1487 are separated by 228 nucleotides SMa1487 and SMa1488 overlap by 4 nucleotides
SMa1485: SMa1485 - Permease, MFS, at 817,966 to 819,255
SMa1485
SMa1487: SMa1487 - cytochrome C, at 819,484 to 819,852
SMa1487
SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092
SMa1488
Position (kb) 819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 818.753 kb on + strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.754 kb on - strand, within SMa1485 at 818.940 kb on - strand, within SMa1485 at 819.108 kb on + strand, within SMa1485 at 819.109 kb on - strand, within SMa1485 at 819.255 kb on + strand at 819.255 kb on + strand at 819.255 kb on + strand at 819.256 kb on - strand at 819.256 kb on - strand at 819.268 kb on + strand at 819.270 kb on + strand at 819.270 kb on + strand at 819.271 kb on - strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.309 kb on + strand at 819.310 kb on - strand at 819.341 kb on + strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.372 kb on - strand at 819.424 kb on - strand at 819.424 kb on - strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.485 kb on + strand at 819.495 kb on + strand at 819.630 kb on + strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.631 kb on - strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.644 kb on + strand, within SMa1487 at 819.645 kb on - strand, within SMa1487 at 820.054 kb on + strand at 820.084 kb on + strand, within SMa1488 at 820.084 kb on + strand, within SMa1488 at 820.085 kb on - strand, within SMa1488 at 820.559 kb on - strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.592 kb on + strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.593 kb on - strand, within SMa1488 at 820.829 kb on - strand, within SMa1488
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 818,753 + SMa1485 0.61 +0.0 818,754 - SMa1485 0.61 -1.1 818,754 - SMa1485 0.61 +0.9 818,940 - SMa1485 0.76 +1.2 819,108 + SMa1485 0.89 -0.6 819,109 - SMa1485 0.89 -0.4 819,255 + -0.4 819,255 + -1.5 819,255 + +2.1 819,256 - +0.0 819,256 - -3.2 819,268 + +0.9 819,270 + -0.1 819,270 + +0.6 819,271 - +0.1 819,309 + -0.2 819,309 + +2.6 819,309 + -0.4 819,309 + +0.3 819,310 - -0.7 819,341 + -0.1 819,372 - +0.9 819,372 - +0.0 819,372 - +0.7 819,424 - +0.2 819,424 - +0.7 819,485 + -2.5 819,485 + +0.2 819,485 + -0.2 819,495 + -0.5 819,630 + SMa1487 0.40 -1.3 819,631 - SMa1487 0.40 -0.5 819,631 - SMa1487 0.40 -0.3 819,644 + SMa1487 0.43 +0.5 819,644 + SMa1487 0.43 -1.9 819,645 - SMa1487 0.44 -0.2 820,054 + +0.6 820,084 + SMa1488 0.10 +0.9 820,084 + SMa1488 0.10 +0.3 820,085 - SMa1488 0.11 +0.1 820,559 - SMa1488 0.32 +0.2 820,592 + SMa1488 0.33 +0.9 820,592 + SMa1488 0.33 -1.1 820,592 + SMa1488 0.33 +0.4 820,592 + SMa1488 0.33 +0.4 820,593 - SMa1488 0.33 +1.6 820,593 - SMa1488 0.33 -0.8 820,829 - SMa1488 0.44 -1.1
Or see this region's nucleotide sequence