Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1467 and SMa1471 are separated by 150 nucleotides SMa1471 and SMa1473 overlap by 1 nucleotides SMa1473 and SMa1476 are separated by 91 nucleotides
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
SMa1473: SMa1473 - aminopeptidase, at 809,859 to 811,163
SMa1473
SMa1476: SMa1476 - AraC family transcriptional regulator, at 811,255 to 812,211
SMa1476
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.386 kb on + strand, within SMa1471 at 809.387 kb on - strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.680 kb on - strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.682 kb on - strand, within SMa1471 at 809.759 kb on + strand, within SMa1471 at 809.927 kb on + strand at 809.982 kb on - strand at 809.983 kb on + strand at 809.983 kb on + strand at 809.984 kb on - strand at 809.984 kb on - strand at 809.984 kb on - strand at 810.019 kb on + strand, within SMa1473 at 810.019 kb on + strand, within SMa1473 at 810.020 kb on - strand, within SMa1473 at 810.043 kb on + strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.110 kb on - strand, within SMa1473 at 810.135 kb on + strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.214 kb on + strand, within SMa1473 at 810.215 kb on - strand, within SMa1473 at 810.226 kb on + strand, within SMa1473 at 810.242 kb on - strand, within SMa1473 at 810.295 kb on + strand, within SMa1473 at 810.300 kb on + strand, within SMa1473 at 810.314 kb on + strand, within SMa1473 at 810.321 kb on - strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.452 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.799 kb on - strand, within SMa1473 at 810.826 kb on + strand, within SMa1473 at 810.827 kb on - strand, within SMa1473 at 810.880 kb on + strand, within SMa1473 at 810.881 kb on - strand, within SMa1473 at 810.935 kb on - strand, within SMa1473 at 810.944 kb on + strand, within SMa1473 at 810.945 kb on - strand, within SMa1473 at 811.149 kb on + strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.232 kb on - strand at 811.256 kb on + strand at 811.463 kb on + strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.464 kb on - strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.718 kb on + strand, within SMa1476 at 811.719 kb on - strand, within SMa1476 at 811.799 kb on + strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 811.800 kb on - strand, within SMa1476 at 812.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 808,987 + -1.8 808,988 - -0.5 809,050 - +1.1 809,050 - -0.7 809,167 + +0.4 809,220 - -0.3 809,263 - SMa1471 0.12 -1.1 809,263 - SMa1471 0.12 -1.8 809,315 + SMa1471 0.20 -0.0 809,316 - SMa1471 0.20 -1.4 809,316 - SMa1471 0.20 -2.1 809,316 - SMa1471 0.20 +0.4 809,386 + SMa1471 0.30 -1.8 809,387 - SMa1471 0.31 -1.9 809,541 + SMa1471 0.53 +1.1 809,541 + SMa1471 0.53 -0.3 809,680 - SMa1471 0.74 +0.4 809,681 + SMa1471 0.74 +1.4 809,681 + SMa1471 0.74 -0.8 809,681 + SMa1471 0.74 +0.5 809,682 - SMa1471 0.74 -0.1 809,759 + SMa1471 0.85 -0.6 809,927 + +1.3 809,982 - -1.1 809,983 + +0.4 809,983 + -1.8 809,984 - -1.3 809,984 - -0.0 809,984 - -0.9 810,019 + SMa1473 0.12 -0.4 810,019 + SMa1473 0.12 -0.3 810,020 - SMa1473 0.12 -0.9 810,043 + SMa1473 0.14 +0.5 810,044 - SMa1473 0.14 -1.6 810,044 - SMa1473 0.14 -1.2 810,110 - SMa1473 0.19 -0.1 810,135 + SMa1473 0.21 -1.2 810,136 - SMa1473 0.21 -2.5 810,136 - SMa1473 0.21 +0.4 810,136 - SMa1473 0.21 +2.4 810,214 + SMa1473 0.27 -0.8 810,215 - SMa1473 0.27 +0.9 810,226 + SMa1473 0.28 -1.2 810,242 - SMa1473 0.29 -1.1 810,295 + SMa1473 0.33 +3.1 810,300 + SMa1473 0.34 -1.4 810,314 + SMa1473 0.35 -2.5 810,321 - SMa1473 0.35 -0.2 810,451 + SMa1473 0.45 -0.3 810,451 + SMa1473 0.45 -2.2 810,451 + SMa1473 0.45 -2.4 810,451 + SMa1473 0.45 +0.2 810,452 - SMa1473 0.45 -0.3 810,541 - SMa1473 0.52 +0.3 810,541 - SMa1473 0.52 +0.1 810,546 + SMa1473 0.53 -0.6 810,546 + SMa1473 0.53 +0.1 810,798 + SMa1473 0.72 -2.8 810,798 + SMa1473 0.72 -2.0 810,799 - SMa1473 0.72 -0.2 810,826 + SMa1473 0.74 -0.3 810,827 - SMa1473 0.74 -0.4 810,880 + SMa1473 0.78 -0.1 810,881 - SMa1473 0.78 -1.1 810,935 - SMa1473 0.82 +0.2 810,944 + SMa1473 0.83 +0.5 810,945 - SMa1473 0.83 -0.8 811,149 + -0.8 811,232 - +1.3 811,232 - -0.1 811,232 - -0.7 811,256 + -0.1 811,463 + SMa1476 0.22 +0.2 811,464 - SMa1476 0.22 -1.1 811,464 - SMa1476 0.22 +1.2 811,464 - SMa1476 0.22 +1.3 811,464 - SMa1476 0.22 -0.1 811,718 + SMa1476 0.48 -0.2 811,718 + SMa1476 0.48 +0.4 811,719 - SMa1476 0.48 +0.1 811,799 + SMa1476 0.57 +1.2 811,800 - SMa1476 0.57 +0.2 811,800 - SMa1476 0.57 +0.6 811,800 - SMa1476 0.57 -0.2 811,800 - SMa1476 0.57 +1.3 812,127 - -0.5
Or see this region's nucleotide sequence