Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1462 and SMa1465 are separated by 23 nucleotides SMa1465 and SMa1466 overlap by 4 nucleotides
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
SMa1465: SMa1465 - ABC transporter permease, at 806,502 to 807,257
SMa1465
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
Position (kb) 806
807
808 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 805.502 kb on - strand at 805.504 kb on - strand at 805.590 kb on - strand at 805.610 kb on + strand at 805.772 kb on + strand, within SMa1462 at 805.772 kb on + strand, within SMa1462 at 805.886 kb on + strand, within SMa1462 at 805.887 kb on - strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.073 kb on + strand, within SMa1462 at 806.090 kb on + strand, within SMa1462 at 806.091 kb on - strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.101 kb on - strand, within SMa1462 at 806.229 kb on + strand, within SMa1462 at 806.230 kb on - strand, within SMa1462 at 806.503 kb on + strand at 806.537 kb on - strand at 806.540 kb on - strand at 806.845 kb on + strand, within SMa1465 at 806.845 kb on + strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.907 kb on - strand, within SMa1465 at 807.103 kb on + strand, within SMa1465 at 807.121 kb on + strand, within SMa1465 at 807.280 kb on - strand at 807.280 kb on - strand at 807.297 kb on + strand at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 805,502 - -1.2 805,504 - -0.8 805,590 - -1.0 805,610 + +0.1 805,772 + SMa1462 0.21 -0.7 805,772 + SMa1462 0.21 -0.6 805,886 + SMa1462 0.33 -1.2 805,887 - SMa1462 0.34 -4.1 806,005 + SMa1462 0.47 -0.0 806,005 + SMa1462 0.47 +0.9 806,005 + SMa1462 0.47 -1.2 806,005 + SMa1462 0.47 +0.6 806,005 + SMa1462 0.47 -2.1 806,006 - SMa1462 0.47 -0.2 806,006 - SMa1462 0.47 +2.2 806,006 - SMa1462 0.47 -0.1 806,006 - SMa1462 0.47 -0.7 806,006 - SMa1462 0.47 +0.6 806,007 + SMa1462 0.47 +0.5 806,007 + SMa1462 0.47 -3.4 806,024 + SMa1462 0.49 +0.4 806,024 + SMa1462 0.49 +1.6 806,073 + SMa1462 0.54 -0.4 806,090 + SMa1462 0.56 +0.0 806,091 - SMa1462 0.56 +0.7 806,096 + SMa1462 0.57 -0.4 806,096 + SMa1462 0.57 +1.0 806,096 + SMa1462 0.57 -0.1 806,096 + SMa1462 0.57 -0.9 806,096 + SMa1462 0.57 -1.4 806,096 + SMa1462 0.57 -0.5 806,096 + SMa1462 0.57 -0.1 806,097 - SMa1462 0.57 -0.1 806,097 - SMa1462 0.57 +0.3 806,097 - SMa1462 0.57 -0.1 806,097 - SMa1462 0.57 -2.8 806,101 - SMa1462 0.58 +0.8 806,229 + SMa1462 0.72 +1.1 806,230 - SMa1462 0.72 +0.2 806,503 + -1.2 806,537 - -2.2 806,540 - -2.8 806,845 + SMa1465 0.45 +0.8 806,845 + SMa1465 0.45 +0.1 806,846 - SMa1465 0.46 -2.4 806,846 - SMa1465 0.46 +0.6 806,846 - SMa1465 0.46 +0.4 806,907 - SMa1465 0.54 +0.8 807,103 + SMa1465 0.79 +1.2 807,121 + SMa1465 0.82 -1.2 807,280 - -0.1 807,280 - -2.7 807,297 + -0.3 807,708 + SMa1466 0.41 -2.2 807,708 + SMa1466 0.41 +0.1 807,737 - SMa1466 0.43 -1.7 807,737 - SMa1466 0.43 -0.1 808,072 + SMa1466 0.73 -1.8 808,123 - SMa1466 0.78 +0.2
Or see this region's nucleotide sequence