Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1434 and SMa1435 overlap by 4 nucleotides SMa1435 and SMa1437 are separated by 12 nucleotides SMa1437 and SMa1438 are separated by 77 nucleotides
SMa1434: SMa1434 - ABC transporter ATP-binding protein, at 789,214 to 790,866
SMa1434
SMa1435: SMa1435 - ABC transporter permease, at 790,863 to 791,780
SMa1435
SMa1437: SMa1437 - ABC transporter permease, at 791,793 to 792,707
SMa1437
SMa1438: SMa1438 - ABC transporter substrate-binding protein, at 792,785 to 794,293
SMa1438
Position (kb) 791
792
793 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 791.015 kb on - strand, within SMa1435 at 791.037 kb on - strand, within SMa1435 at 791.330 kb on + strand, within SMa1435 at 791.331 kb on - strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.332 kb on + strand, within SMa1435 at 791.333 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.406 kb on - strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.407 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.422 kb on + strand, within SMa1435 at 791.560 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.682 kb on + strand, within SMa1435 at 791.683 kb on - strand, within SMa1435 at 791.754 kb on + strand at 791.755 kb on - strand at 791.824 kb on + strand at 792.098 kb on + strand, within SMa1437 at 792.098 kb on + strand, within SMa1437 at 792.212 kb on + strand, within SMa1437 at 792.509 kb on - strand, within SMa1437 at 792.803 kb on - strand at 792.874 kb on - strand at 793.041 kb on + strand, within SMa1438 at 793.041 kb on + strand, within SMa1438 at 793.042 kb on - strand, within SMa1438 at 793.242 kb on + strand, within SMa1438 at 793.243 kb on - strand, within SMa1438 at 793.537 kb on - strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.650 kb on + strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438 at 793.651 kb on - strand, within SMa1438
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 791,015 - SMa1435 0.17 +1.4 791,037 - SMa1435 0.19 +1.0 791,330 + SMa1435 0.51 -0.8 791,331 - SMa1435 0.51 +0.4 791,332 + SMa1435 0.51 -0.1 791,332 + SMa1435 0.51 -1.7 791,333 - SMa1435 0.51 +0.1 791,406 - SMa1435 0.59 -1.1 791,406 - SMa1435 0.59 -0.4 791,406 - SMa1435 0.59 -2.4 791,407 + SMa1435 0.59 +0.1 791,407 + SMa1435 0.59 -0.1 791,422 + SMa1435 0.61 +0.4 791,422 + SMa1435 0.61 +0.2 791,560 + SMa1435 0.76 +0.2 791,682 + SMa1435 0.89 -0.3 791,682 + SMa1435 0.89 +0.2 791,683 - SMa1435 0.89 +0.4 791,754 + -0.2 791,755 - -0.8 791,824 + +0.2 792,098 + SMa1437 0.33 -0.3 792,098 + SMa1437 0.33 -0.0 792,212 + SMa1437 0.46 -0.5 792,509 - SMa1437 0.78 -1.2 792,803 - -0.8 792,874 - -0.1 793,041 + SMa1438 0.17 +0.1 793,041 + SMa1438 0.17 +1.2 793,042 - SMa1438 0.17 +0.9 793,242 + SMa1438 0.30 +1.1 793,243 - SMa1438 0.30 -1.0 793,537 - SMa1438 0.50 -0.0 793,650 + SMa1438 0.57 +0.5 793,650 + SMa1438 0.57 -0.2 793,650 + SMa1438 0.57 -0.1 793,650 + SMa1438 0.57 +0.8 793,650 + SMa1438 0.57 -2.9 793,651 - SMa1438 0.57 +0.2 793,651 - SMa1438 0.57 +0.2 793,651 - SMa1438 0.57 +0.9 793,651 - SMa1438 0.57 +0.1
Or see this region's nucleotide sequence