Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1283 and SMa1285 are separated by 365 nucleotides SMa1285 and SMa1288 overlap by 4 nucleotides
SMa1283: SMa1283 - NnrU family protein, at 700,220 to 700,906
SMa1283
SMa1285: SMa1285 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 701,272 to 701,874
SMa1285
SMa1288: SMa1288 - Carboxylase, at 701,871 to 703,322
SMa1288
Position (kb) 701
702 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 700.337 kb on + strand, within SMa1283 at 700.376 kb on + strand, within SMa1283 at 700.671 kb on + strand, within SMa1283 at 700.671 kb on + strand, within SMa1283 at 700.672 kb on - strand, within SMa1283 at 700.672 kb on - strand, within SMa1283 at 700.672 kb on - strand, within SMa1283 at 700.675 kb on + strand, within SMa1283 at 700.675 kb on + strand, within SMa1283 at 700.676 kb on - strand, within SMa1283 at 700.676 kb on - strand, within SMa1283 at 700.904 kb on + strand at 700.904 kb on + strand at 700.904 kb on + strand at 700.905 kb on - strand at 700.905 kb on - strand at 701.104 kb on + strand at 701.273 kb on + strand at 701.273 kb on + strand at 701.274 kb on - strand at 701.274 kb on - strand at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.408 kb on + strand, within SMa1285 at 701.678 kb on + strand, within SMa1285 at 702.046 kb on + strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.047 kb on - strand, within SMa1288 at 702.165 kb on + strand, within SMa1288 at 702.173 kb on + strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.174 kb on - strand, within SMa1288 at 702.216 kb on - strand, within SMa1288 at 702.268 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.292 kb on + strand, within SMa1288 at 702.293 kb on - strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.294 kb on + strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.295 kb on - strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.406 kb on + strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.407 kb on - strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.472 kb on + strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.473 kb on - strand, within SMa1288 at 702.494 kb on - strand, within SMa1288 at 702.814 kb on + strand, within SMa1288 at 702.814 kb on + strand, within SMa1288
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 700,337 + SMa1283 0.17 -2.2 700,376 + SMa1283 0.23 +1.5 700,671 + SMa1283 0.66 -1.0 700,671 + SMa1283 0.66 +0.7 700,672 - SMa1283 0.66 -2.6 700,672 - SMa1283 0.66 -0.7 700,672 - SMa1283 0.66 +0.0 700,675 + SMa1283 0.66 -1.4 700,675 + SMa1283 0.66 +0.3 700,676 - SMa1283 0.66 -0.5 700,676 - SMa1283 0.66 -0.0 700,904 + -0.8 700,904 + +0.3 700,904 + +0.2 700,905 - -0.1 700,905 - +0.6 701,104 + -0.4 701,273 + -1.2 701,273 + -0.1 701,274 - -0.4 701,274 - +0.1 701,408 + SMa1285 0.23 -0.9 701,408 + SMa1285 0.23 +1.3 701,408 + SMa1285 0.23 +0.1 701,408 + SMa1285 0.23 +0.6 701,408 + SMa1285 0.23 -0.2 701,678 + SMa1285 0.67 +2.0 702,046 + SMa1288 0.12 -3.0 702,047 - SMa1288 0.12 +0.5 702,047 - SMa1288 0.12 -0.2 702,165 + SMa1288 0.20 +0.2 702,173 + SMa1288 0.21 +1.2 702,174 - SMa1288 0.21 +0.8 702,174 - SMa1288 0.21 +0.4 702,216 - SMa1288 0.24 -0.4 702,268 + SMa1288 0.27 -0.5 702,292 + SMa1288 0.29 +0.1 702,292 + SMa1288 0.29 -0.8 702,292 + SMa1288 0.29 +2.0 702,292 + SMa1288 0.29 -2.5 702,293 - SMa1288 0.29 -1.2 702,294 + SMa1288 0.29 -0.3 702,294 + SMa1288 0.29 +0.5 702,295 - SMa1288 0.29 +0.1 702,295 - SMa1288 0.29 +0.1 702,406 + SMa1288 0.37 -1.3 702,406 + SMa1288 0.37 -0.1 702,407 - SMa1288 0.37 +1.5 702,407 - SMa1288 0.37 -0.8 702,407 - SMa1288 0.37 +1.0 702,407 - SMa1288 0.37 +0.7 702,472 + SMa1288 0.41 -1.4 702,472 + SMa1288 0.41 +0.4 702,472 + SMa1288 0.41 -1.0 702,472 + SMa1288 0.41 +0.3 702,472 + SMa1288 0.41 -1.6 702,472 + SMa1288 0.41 +0.1 702,473 - SMa1288 0.41 +0.7 702,473 - SMa1288 0.41 +0.5 702,494 - SMa1288 0.43 -1.4 702,814 + SMa1288 0.65 -1.1 702,814 + SMa1288 0.65 -0.1
Or see this region's nucleotide sequence