Strain Fitness in Sinorhizobium meliloti 1021 around SMa1266

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1264 and SMa1266 are separated by 447 nucleotidesSMa1266 and SMa1269 are separated by 79 nucleotides SMa1264: SMa1264 - hypothetical protein, at 691,495 to 692,028 SMa1264 SMa1266: SMa1266 - coproporphyrinogen III oxidase, at 692,476 to 693,828 SMa1266 SMa1269: SMa1269 - NorD accessory protein for nitric oxide reductase, at 693,908 to 695,803 SMa1269 Position (kb) 692 693 694Strain fitness (log2 ratio) -2 -1 0 1 2 3at 691.871 kb on + strand, within SMa1264at 691.934 kb on + strand, within SMa1264at 691.934 kb on + strand, within SMa1264at 691.937 kb on + strand, within SMa1264at 691.938 kb on - strand, within SMa1264at 691.957 kb on - strand, within SMa1264at 692.029 kb on - strandat 692.154 kb on - strandat 692.156 kb on - strandat 692.195 kb on + strandat 692.196 kb on - strandat 692.317 kb on + strandat 692.317 kb on + strandat 692.318 kb on - strandat 692.318 kb on - strandat 692.318 kb on - strandat 692.376 kb on + strandat 692.376 kb on + strandat 692.376 kb on + strandat 692.500 kb on + strandat 692.501 kb on - strandat 692.501 kb on - strandat 692.578 kb on + strandat 692.579 kb on - strandat 692.579 kb on - strandat 692.626 kb on + strand, within SMa1266at 692.663 kb on - strand, within SMa1266at 692.713 kb on + strand, within SMa1266at 692.744 kb on + strand, within SMa1266at 692.744 kb on + strand, within SMa1266at 692.745 kb on - strand, within SMa1266at 692.772 kb on + strand, within SMa1266at 692.811 kb on + strand, within SMa1266at 692.812 kb on - strand, within SMa1266at 692.843 kb on + strand, within SMa1266at 692.843 kb on + strand, within SMa1266at 692.843 kb on + strand, within SMa1266at 693.098 kb on - strandat 693.098 kb on - strand, within SMa1266at 693.098 kb on - strandat 693.188 kb on - strand, within SMa1266at 693.401 kb on - strand, within SMa1266at 693.469 kb on + strand, within SMa1266at 693.512 kb on + strand, within SMa1266at 693.512 kb on + strand, within SMa1266at 693.512 kb on + strand, within SMa1266at 693.513 kb on - strand, within SMa1266at 693.565 kb on - strand, within SMa1266at 693.685 kb on - strand, within SMa1266at 693.685 kb on - strand, within SMa1266at 693.685 kb on - strand, within SMa1266at 693.685 kb on - strand, within SMa1266at 693.728 kb on + strandat 693.729 kb on - strandat 693.729 kb on - strandat 693.787 kb on + strandat 693.787 kb on + strandat 693.788 kb on - strandat 693.813 kb on + strandat 693.814 kb on - strandat 693.814 kb on - strandat 693.814 kb on - strandat 693.866 kb on + strandat 693.867 kb on - strandat 693.910 kb on - strandat 693.914 kb on + strandat 693.914 kb on + strandat 693.915 kb on - strandat 693.915 kb on - strandat 693.917 kb on + strandat 693.996 kb on - strandat 694.113 kb on + strand, within SMa1269at 694.114 kb on - strand, within SMa1269at 694.227 kb on + strand, within SMa1269at 694.231 kb on - strand, within SMa1269at 694.455 kb on - strand, within SMa1269at 694.743 kb on + strand, within SMa1269at 694.743 kb on + strand, within SMa1269at 694.744 kb on - strand, within SMa1269at 694.744 kb on - strand, within SMa1269

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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691,871 + SMa1264 0.70 -0.9
691,934 + SMa1264 0.82 -1.8
691,934 + SMa1264 0.82 +0.3
691,937 + SMa1264 0.83 -0.6
691,938 - SMa1264 0.83 +0.6
691,957 - SMa1264 0.87 +0.1
692,029 - +0.3
692,154 - +0.2
692,156 - -0.8
692,195 + +0.4
692,196 - -0.3
692,317 + -0.8
692,317 + +1.2
692,318 - -1.5
692,318 - -1.1
692,318 - -0.1
692,376 + -0.1
692,376 + -0.5
692,376 + -1.0
692,500 + +1.8
692,501 - +0.7
692,501 - -1.7
692,578 + -0.0
692,579 - -0.5
692,579 - -0.5
692,626 + SMa1266 0.11 -0.8
692,663 - SMa1266 0.14 -0.4
692,713 + SMa1266 0.18 +0.2
692,744 + SMa1266 0.20 +2.5
692,744 + SMa1266 0.20 -0.2
692,745 - SMa1266 0.20 -0.3
692,772 + SMa1266 0.22 -0.6
692,811 + SMa1266 0.25 +0.2
692,812 - SMa1266 0.25 +0.4
692,843 + SMa1266 0.27 +0.9
692,843 + SMa1266 0.27 +0.6
692,843 + SMa1266 0.27 -2.0
693,098 - +1.2
693,098 - SMa1266 0.46 -0.1
693,098 - +1.2
693,188 - SMa1266 0.53 +0.6
693,401 - SMa1266 0.68 -0.8
693,469 + SMa1266 0.73 -0.6
693,512 + SMa1266 0.77 -0.2
693,512 + SMa1266 0.77 +0.3
693,512 + SMa1266 0.77 -0.3
693,513 - SMa1266 0.77 -2.0
693,565 - SMa1266 0.80 +0.0
693,685 - SMa1266 0.89 -1.5
693,685 - SMa1266 0.89 +0.2
693,685 - SMa1266 0.89 -0.2
693,685 - SMa1266 0.89 -0.3
693,728 + -2.0
693,729 - -0.4
693,729 - -0.1
693,787 + +1.0
693,787 + -1.1
693,788 - +0.0
693,813 + -0.8
693,814 - -0.4
693,814 - +0.4
693,814 - -0.6
693,866 + +3.2
693,867 - +0.4
693,910 - -1.0
693,914 + -0.7
693,914 + +0.2
693,915 - -1.7
693,915 - -1.0
693,917 + -0.4
693,996 - +0.3
694,113 + SMa1269 0.11 +0.2
694,114 - SMa1269 0.11 -0.4
694,227 + SMa1269 0.17 +0.3
694,231 - SMa1269 0.17 -0.0
694,455 - SMa1269 0.29 +0.6
694,743 + SMa1269 0.44 -0.9
694,743 + SMa1269 0.44 -0.4
694,744 - SMa1269 0.44 +0.8
694,744 - SMa1269 0.44 -2.0

Or see this region's nucleotide sequence