Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1118 and SMa1120 are separated by 56 nucleotides SMa1120 and SMa1122 are separated by 6 nucleotides SMa1122 and SMa1124 are separated by 3 nucleotides
SMa1118: SMa1118 - HspC2 heat shock protein, at 608,683 to 609,210
SMa1118
SMa1120: SMa1120 - ABC transporter ATP-binding protein, at 609,267 to 610,181
SMa1120
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.282 kb on - strand at 609.304 kb on + strand at 609.461 kb on - strand, within SMa1120 at 609.615 kb on - strand, within SMa1120 at 609.632 kb on + strand, within SMa1120 at 609.650 kb on + strand, within SMa1120 at 610.108 kb on - strand at 610.253 kb on - strand at 610.305 kb on - strand at 610.335 kb on + strand at 610.335 kb on + strand at 610.920 kb on + strand, within SMa1122 at 610.920 kb on + strand, within SMa1122 at 610.921 kb on - strand, within SMa1122 at 611.127 kb on + strand, within SMa1122 at 611.128 kb on - strand, within SMa1122 at 611.128 kb on - strand, within SMa1122 at 611.144 kb on + strand, within SMa1122 at 611.145 kb on - strand, within SMa1122 at 611.396 kb on + strand, within SMa1122 at 611.396 kb on + strand, within SMa1122 at 611.397 kb on - strand, within SMa1122 at 611.455 kb on + strand, within SMa1122 at 611.539 kb on + strand, within SMa1122 at 611.629 kb on + strand, within SMa1122 at 611.893 kb on + strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 612.210 kb on + strand, within SMa1122 at 612.217 kb on - strand, within SMa1122 at 612.253 kb on + strand, within SMa1122 at 612.254 kb on - strand, within SMa1122 at 612.378 kb on + strand at 612.378 kb on + strand at 612.442 kb on - strand at 612.549 kb on + strand at 612.549 kb on + strand at 612.550 kb on - strand at 612.625 kb on - strand at 612.625 kb on - strand at 612.767 kb on + strand, within SMa1124 at 613.038 kb on + strand, within SMa1124 at 613.082 kb on - strand, within SMa1124
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 609,282 - -0.5 609,304 + -1.4 609,461 - SMa1120 0.21 -1.4 609,615 - SMa1120 0.38 +0.1 609,632 + SMa1120 0.40 +0.2 609,650 + SMa1120 0.42 +0.4 610,108 - +1.1 610,253 - +0.7 610,305 - -0.4 610,335 + -1.6 610,335 + +0.2 610,920 + SMa1122 0.31 +2.7 610,920 + SMa1122 0.31 -0.5 610,921 - SMa1122 0.31 -1.3 611,127 + SMa1122 0.40 +0.2 611,128 - SMa1122 0.40 -0.3 611,128 - SMa1122 0.40 +0.3 611,144 + SMa1122 0.40 -1.4 611,145 - SMa1122 0.40 -0.5 611,396 + SMa1122 0.51 -0.7 611,396 + SMa1122 0.51 -1.5 611,397 - SMa1122 0.51 -0.4 611,455 + SMa1122 0.54 +0.2 611,539 + SMa1122 0.57 +1.1 611,629 + SMa1122 0.61 +0.4 611,893 + SMa1122 0.72 +0.1 611,947 - SMa1122 0.74 +1.1 611,947 - SMa1122 0.74 -2.2 612,210 + SMa1122 0.86 +0.0 612,217 - SMa1122 0.86 +0.6 612,253 + SMa1122 0.87 -1.0 612,254 - SMa1122 0.87 -0.9 612,378 + -0.4 612,378 + -1.2 612,442 - +1.1 612,549 + +0.3 612,549 + -0.2 612,550 - -0.8 612,625 - +0.0 612,625 - -0.4 612,767 + SMa1124 0.18 +0.2 613,038 + SMa1124 0.40 +1.0 613,082 - SMa1124 0.44 +0.1
Or see this region's nucleotide sequence