Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1052 and SMa1053 overlap by 4 nucleotides SMa1053 and SMa1056 overlap by 4 nucleotides SMa1056 and SMa1057 overlap by 10 nucleotides SMa1057 and SMa1058 are separated by 121 nucleotides SMa1058 and SMa1060 are separated by 301 nucleotides
SMa1052: SMa1052 - hypothetical protein, at 576,639 to 577,070
SMa1052
SMa1053: SMa1053 - hypothetical protein, at 577,067 to 577,477
SMa1053
SMa1056: SMa1056 - transcriptional regulator, at 577,474 to 577,821
SMa1056
SMa1057: SMa1057 - hypothetical protein, at 577,812 to 579,110
SMa1057
SMa1058: SMa1058 - hypothetical protein, at 579,232 to 579,684
SMa1058
SMa1060: SMa1060 - hypothetical protein, at 579,986 to 581,353
SMa1060
Position (kb) 577
578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 577.317 kb on - strand, within SMa1053 at 577.387 kb on + strand, within SMa1053 at 577.636 kb on + strand, within SMa1056 at 577.637 kb on - strand, within SMa1056 at 577.833 kb on + strand at 577.834 kb on - strand at 578.252 kb on + strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.253 kb on - strand, within SMa1057 at 578.297 kb on + strand, within SMa1057 at 578.363 kb on + strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.412 kb on - strand, within SMa1057 at 578.443 kb on + strand, within SMa1057 at 578.521 kb on + strand, within SMa1057 at 578.522 kb on - strand at 578.522 kb on - strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.632 kb on + strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.633 kb on - strand, within SMa1057 at 578.800 kb on + strand, within SMa1057 at 578.801 kb on - strand, within SMa1057 at 578.929 kb on + strand, within SMa1057 at 579.064 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.102 kb on - strand at 579.104 kb on + strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.105 kb on - strand at 579.254 kb on + strand at 579.507 kb on + strand, within SMa1058 at 579.508 kb on - strand, within SMa1058 at 579.615 kb on - strand, within SMa1058 at 579.648 kb on - strand at 579.743 kb on + strand at 579.743 kb on + strand at 579.744 kb on - strand at 579.980 kb on + strand at 579.981 kb on - strand at 580.050 kb on + strand at 580.050 kb on + strand at 580.051 kb on - strand at 580.051 kb on - strand at 580.068 kb on + strand at 580.068 kb on + strand at 580.069 kb on - strand at 580.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 577,317 - SMa1053 0.61 +0.6 577,387 + SMa1053 0.78 -1.4 577,636 + SMa1056 0.47 -0.3 577,637 - SMa1056 0.47 -3.7 577,833 + +0.2 577,834 - -0.6 578,252 + SMa1057 0.34 +0.5 578,253 - SMa1057 0.34 -2.3 578,253 - SMa1057 0.34 -1.2 578,253 - SMa1057 0.34 +1.1 578,253 - SMa1057 0.34 -2.7 578,253 - SMa1057 0.34 -2.0 578,253 - SMa1057 0.34 +0.2 578,297 + SMa1057 0.37 +0.2 578,363 + SMa1057 0.42 +1.1 578,412 - SMa1057 0.46 +0.5 578,412 - SMa1057 0.46 +0.8 578,443 + SMa1057 0.49 -2.7 578,521 + SMa1057 0.55 -1.8 578,522 - +1.1 578,522 - SMa1057 0.55 -1.3 578,632 + SMa1057 0.63 -0.4 578,632 + SMa1057 0.63 -1.2 578,633 - SMa1057 0.63 -0.1 578,633 - SMa1057 0.63 +0.6 578,800 + SMa1057 0.76 -0.5 578,801 - SMa1057 0.76 -0.2 578,929 + SMa1057 0.86 +0.4 579,064 - +1.1 579,102 - +0.9 579,102 - +0.4 579,102 - -0.6 579,102 - -0.5 579,102 - -2.0 579,104 + -0.6 579,105 - -2.3 579,105 - -0.1 579,105 - -0.5 579,254 + -0.5 579,507 + SMa1058 0.61 +0.9 579,508 - SMa1058 0.61 +1.3 579,615 - SMa1058 0.85 -2.0 579,648 - -0.1 579,743 + -0.0 579,743 + +0.8 579,744 - +0.3 579,980 + -0.6 579,981 - +0.0 580,050 + -0.4 580,050 + -2.3 580,051 - +0.4 580,051 - -0.4 580,068 + +0.2 580,068 + +0.7 580,069 - -1.7 580,069 - -0.5
Or see this region's nucleotide sequence