Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0937 and SMa0939 are separated by 292 nucleotides SMa0939 and SMa0940 are separated by 4 nucleotides SMa0940 and SMa0941 are separated by 120 nucleotides
SMa0937: SMa0937 - hypothetical protein, at 520,761 to 522,920
SMa0937
SMa0939: SMa0939 - sensor histidine kinase of two-component system, at 523,213 to 525,114
SMa0939
SMa0940: SMa0940 - Response regulator, at 525,119 to 525,733
SMa0940
SMa0941: SMa0941 - hypothetical protein, at 525,854 to 526,237
SMa0941
Position (kb)
523
524
525
526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 522.834 kb on - strand at 522.951 kb on + strand at 522.952 kb on - strand at 522.952 kb on - strand at 523.093 kb on + strand at 523.093 kb on + strand at 523.094 kb on - strand at 523.094 kb on - strand at 523.094 kb on - strand at 523.111 kb on - strand at 523.116 kb on - strand at 523.127 kb on + strand at 523.155 kb on - strand at 523.373 kb on - strand at 523.373 kb on - strand at 523.405 kb on - strand, within SMa0939 at 523.520 kb on + strand, within SMa0939 at 523.544 kb on - strand, within SMa0939 at 523.724 kb on + strand, within SMa0939 at 523.857 kb on + strand, within SMa0939 at 523.870 kb on + strand, within SMa0939 at 523.955 kb on + strand, within SMa0939 at 523.956 kb on - strand, within SMa0939 at 523.956 kb on - strand, within SMa0939 at 524.032 kb on + strand, within SMa0939 at 524.032 kb on + strand, within SMa0939 at 524.032 kb on + strand, within SMa0939 at 524.032 kb on + strand, within SMa0939 at 524.033 kb on - strand, within SMa0939 at 524.042 kb on - strand, within SMa0939 at 524.176 kb on + strand, within SMa0939 at 524.177 kb on - strand, within SMa0939 at 524.177 kb on - strand, within SMa0939 at 524.246 kb on + strand, within SMa0939 at 524.279 kb on - strand, within SMa0939 at 524.294 kb on + strand, within SMa0939 at 525.213 kb on - strand, within SMa0940 at 525.213 kb on - strand, within SMa0940 at 525.380 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.521 kb on - strand, within SMa0940 at 525.613 kb on + strand, within SMa0940 at 525.614 kb on - strand, within SMa0940 at 525.776 kb on - strand at 525.850 kb on + strand at 525.850 kb on + strand at 525.916 kb on - strand, within SMa0941 at 525.916 kb on - strand, within SMa0941 at 525.956 kb on + strand, within SMa0941 at 525.957 kb on - strand, within SMa0941 at 525.989 kb on - strand, within SMa0941 at 526.109 kb on - strand, within SMa0941
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 522,834 - +0.9 522,951 + -1.7 522,952 - +2.5 522,952 - -0.0 523,093 + +0.1 523,093 + -2.9 523,094 - -0.2 523,094 - -0.9 523,094 - +0.2 523,111 - +3.9 523,116 - -0.4 523,127 + -0.1 523,155 - -1.6 523,373 - +1.1 523,373 - -0.9 523,405 - SMa0939 0.10 -0.7 523,520 + SMa0939 0.16 +0.5 523,544 - SMa0939 0.17 -1.6 523,724 + SMa0939 0.27 +0.9 523,857 + SMa0939 0.34 +0.8 523,870 + SMa0939 0.35 -1.1 523,955 + SMa0939 0.39 +0.3 523,956 - SMa0939 0.39 -0.1 523,956 - SMa0939 0.39 -1.8 524,032 + SMa0939 0.43 -1.4 524,032 + SMa0939 0.43 -1.5 524,032 + SMa0939 0.43 -0.1 524,032 + SMa0939 0.43 +0.6 524,033 - SMa0939 0.43 -0.8 524,042 - SMa0939 0.44 +0.0 524,176 + SMa0939 0.51 -0.6 524,177 - SMa0939 0.51 -0.7 524,177 - SMa0939 0.51 -0.8 524,246 + SMa0939 0.54 -1.4 524,279 - SMa0939 0.56 -0.6 524,294 + SMa0939 0.57 +0.2 525,213 - SMa0940 0.15 +0.9 525,213 - SMa0940 0.15 -0.5 525,380 - SMa0940 0.42 -0.3 525,521 - SMa0940 0.65 +1.2 525,521 - SMa0940 0.65 -2.7 525,521 - SMa0940 0.65 +1.1 525,613 + SMa0940 0.80 -0.5 525,614 - SMa0940 0.80 +0.5 525,776 - -2.7 525,850 + -0.2 525,850 + +0.2 525,916 - SMa0941 0.16 +0.2 525,916 - SMa0941 0.16 +0.1 525,956 + SMa0941 0.27 -1.5 525,957 - SMa0941 0.27 +0.2 525,989 - SMa0941 0.35 -3.0 526,109 - SMa0941 0.66 +0.2
Or see this region's nucleotide sequence