Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0773 and SMa0774 are separated by 6 nucleotides SMa0774 and SMa0775 are separated by 325 nucleotides
SMa0773: SMa0773 - NoeA host specific nodulation protein, at 419,284 to 420,714
SMa0773
SMa0774: SMa0774 - NoeB host specific nodulation protein, at 420,721 to 422,382
SMa0774
SMa0775: SMa0775 - hypothetical protein, at 422,708 to 423,034
SMa0775
Position (kb) 420
421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 419.769 kb on + strand, within SMa0773 at 419.769 kb on + strand, within SMa0773 at 419.770 kb on - strand, within SMa0773 at 419.962 kb on - strand, within SMa0773 at 419.981 kb on + strand, within SMa0773 at 419.982 kb on - strand, within SMa0773 at 420.106 kb on + strand, within SMa0773 at 420.125 kb on - strand, within SMa0773 at 420.158 kb on - strand, within SMa0773 at 420.213 kb on + strand, within SMa0773 at 420.237 kb on - strand, within SMa0773 at 420.666 kb on - strand at 420.668 kb on + strand at 420.668 kb on + strand at 420.669 kb on - strand at 420.744 kb on - strand at 420.744 kb on - strand at 420.755 kb on + strand at 420.755 kb on + strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.797 kb on - strand at 420.799 kb on - strand at 421.040 kb on + strand, within SMa0774 at 421.041 kb on - strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.044 kb on + strand, within SMa0774 at 421.050 kb on + strand, within SMa0774 at 421.084 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.120 kb on - strand, within SMa0774 at 421.144 kb on - strand, within SMa0774 at 421.183 kb on + strand, within SMa0774 at 421.232 kb on + strand, within SMa0774 at 421.520 kb on + strand, within SMa0774 at 421.713 kb on + strand, within SMa0774 at 421.851 kb on + strand, within SMa0774 at 421.864 kb on + strand, within SMa0774 at 421.910 kb on - strand, within SMa0774 at 421.915 kb on - strand, within SMa0774 at 421.947 kb on - strand, within SMa0774 at 422.094 kb on + strand, within SMa0774 at 422.094 kb on + strand, within SMa0774 at 422.095 kb on - strand, within SMa0774 at 422.122 kb on - strand, within SMa0774 at 422.138 kb on - strand, within SMa0774 at 422.273 kb on + strand at 422.274 kb on - strand at 422.276 kb on + strand at 422.315 kb on - strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.346 kb on + strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.347 kb on - strand at 422.430 kb on - strand at 422.430 kb on - strand at 422.559 kb on - strand at 422.578 kb on - strand at 422.589 kb on + strand at 422.616 kb on + strand at 422.616 kb on + strand at 422.619 kb on - strand at 422.622 kb on + strand at 422.679 kb on + strand at 422.847 kb on - strand, within SMa0775 at 422.927 kb on - strand, within SMa0775 at 422.990 kb on + strand, within SMa0775 at 422.991 kb on - strand, within SMa0775 at 423.140 kb on + strand at 423.140 kb on + strand at 423.140 kb on + strand at 423.140 kb on + strand at 423.307 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 419,769 + SMa0773 0.34 -1.7 419,769 + SMa0773 0.34 +0.1 419,770 - SMa0773 0.34 -0.3 419,962 - SMa0773 0.47 -0.8 419,981 + SMa0773 0.49 -0.5 419,982 - SMa0773 0.49 +0.4 420,106 + SMa0773 0.57 -1.0 420,125 - SMa0773 0.59 +2.3 420,158 - SMa0773 0.61 -0.7 420,213 + SMa0773 0.65 -0.4 420,237 - SMa0773 0.67 +1.0 420,666 - +1.2 420,668 + -0.4 420,668 + +0.2 420,669 - -0.1 420,744 - +0.6 420,744 - +1.1 420,755 + +0.7 420,755 + -0.4 420,796 + +1.9 420,796 + -1.9 420,797 - +0.3 420,799 - +0.2 421,040 + SMa0774 0.19 +1.3 421,041 - SMa0774 0.19 -0.2 421,044 + SMa0774 0.19 -0.1 421,044 + SMa0774 0.19 +0.3 421,050 + SMa0774 0.20 -0.9 421,084 - SMa0774 0.22 -1.3 421,120 - SMa0774 0.24 +0.1 421,120 - SMa0774 0.24 +1.7 421,144 - SMa0774 0.25 +1.2 421,183 + SMa0774 0.28 +1.3 421,232 + SMa0774 0.31 +1.1 421,520 + SMa0774 0.48 +2.0 421,713 + SMa0774 0.60 -1.1 421,851 + SMa0774 0.68 -0.4 421,864 + SMa0774 0.69 +1.5 421,910 - SMa0774 0.72 +3.9 421,915 - SMa0774 0.72 +4.1 421,947 - SMa0774 0.74 +0.5 422,094 + SMa0774 0.83 -0.9 422,094 + SMa0774 0.83 -0.1 422,095 - SMa0774 0.83 -0.3 422,122 - SMa0774 0.84 +0.8 422,138 - SMa0774 0.85 +0.2 422,273 + -2.3 422,274 - -0.0 422,276 + -0.0 422,315 - -1.7 422,346 + -2.1 422,346 + -0.0 422,346 + +0.6 422,346 + -0.1 422,347 - -1.6 422,347 - -1.3 422,347 - +0.4 422,347 - +0.2 422,430 - -1.2 422,430 - -0.4 422,559 - +1.5 422,578 - -0.5 422,589 + +0.3 422,616 + +0.1 422,616 + -0.6 422,619 - -0.2 422,622 + +1.1 422,679 + -0.7 422,847 - SMa0775 0.43 +1.0 422,927 - SMa0775 0.67 -0.1 422,990 + SMa0775 0.86 -0.4 422,991 - SMa0775 0.87 +0.4 423,140 + -0.7 423,140 + -0.0 423,140 + -0.1 423,140 + -1.9 423,307 + +0.0
Or see this region's nucleotide sequence