Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0607 and SMa0609 are separated by 57 nucleotides SMa0609 and SMa0610 are separated by 5 nucleotides SMa0610 and SMa0612 are separated by 304 nucleotides
SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168
SMa0607
SMa0609: SMa0609 - hypothetical protein, at 325,226 to 325,801
SMa0609
SMa0610: SMa0610 - hypothetical protein, at 325,807 to 326,667
SMa0610
SMa0612: SMa0612 - cbb3-type cytochrome c oxidase subunit I, at 326,972 to 328,627
SMa0612
Position (kb) 325
326
327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 324.855 kb on - strand, within SMa0607 at 324.867 kb on + strand, within SMa0607 at 324.867 kb on + strand, within SMa0607 at 324.912 kb on - strand, within SMa0607 at 324.912 kb on - strand, within SMa0607 at 325.014 kb on + strand at 325.104 kb on - strand at 325.166 kb on + strand at 325.203 kb on + strand at 325.204 kb on - strand at 325.204 kb on - strand at 325.222 kb on + strand at 325.222 kb on + strand at 325.263 kb on + strand at 325.297 kb on + strand, within SMa0609 at 325.398 kb on - strand, within SMa0609 at 325.604 kb on + strand, within SMa0609 at 325.607 kb on + strand, within SMa0609 at 325.607 kb on + strand, within SMa0609 at 325.638 kb on - strand, within SMa0609 at 325.651 kb on + strand, within SMa0609 at 325.651 kb on + strand, within SMa0609 at 325.652 kb on - strand, within SMa0609 at 325.689 kb on - strand, within SMa0609 at 325.689 kb on - strand, within SMa0609 at 325.766 kb on + strand at 325.767 kb on - strand at 325.767 kb on - strand at 325.791 kb on + strand at 325.791 kb on + strand at 325.799 kb on + strand at 325.799 kb on + strand at 325.800 kb on - strand at 325.800 kb on - strand at 325.800 kb on - strand at 325.838 kb on - strand at 325.948 kb on + strand, within SMa0610 at 325.949 kb on - strand, within SMa0610 at 325.998 kb on + strand, within SMa0610 at 325.999 kb on - strand, within SMa0610 at 326.060 kb on + strand, within SMa0610 at 326.060 kb on + strand, within SMa0610 at 326.242 kb on + strand, within SMa0610 at 326.259 kb on - strand, within SMa0610 at 326.269 kb on + strand, within SMa0610 at 326.269 kb on + strand, within SMa0610 at 326.270 kb on - strand, within SMa0610 at 326.327 kb on - strand, within SMa0610 at 326.327 kb on - strand, within SMa0610 at 326.327 kb on - strand, within SMa0610 at 326.382 kb on + strand, within SMa0610 at 326.389 kb on + strand, within SMa0610 at 326.389 kb on + strand, within SMa0610 at 326.389 kb on + strand, within SMa0610 at 326.390 kb on - strand, within SMa0610 at 326.390 kb on - strand, within SMa0610 at 326.566 kb on + strand, within SMa0610 at 326.566 kb on + strand, within SMa0610 at 326.566 kb on + strand, within SMa0610 at 326.567 kb on - strand, within SMa0610 at 326.583 kb on - strand at 326.598 kb on + strand at 326.665 kb on + strand at 326.666 kb on - strand at 326.666 kb on - strand at 326.927 kb on + strand at 326.928 kb on - strand at 326.928 kb on - strand at 327.031 kb on + strand at 327.032 kb on - strand at 327.104 kb on + strand at 327.106 kb on + strand at 327.122 kb on + strand at 327.123 kb on - strand at 327.180 kb on - strand, within SMa0612 at 327.180 kb on - strand, within SMa0612 at 327.334 kb on + strand, within SMa0612 at 327.522 kb on - strand, within SMa0612 at 327.540 kb on - strand, within SMa0612 at 327.576 kb on - strand, within SMa0612 at 327.587 kb on + strand, within SMa0612 at 327.587 kb on + strand, within SMa0612 at 327.587 kb on + strand, within SMa0612 at 327.626 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.644 kb on + strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612 at 327.645 kb on - strand, within SMa0612
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 324,855 - SMa0607 0.80 +0.1 324,867 + SMa0607 0.81 -0.7 324,867 + SMa0607 0.81 -2.8 324,912 - SMa0607 0.83 +0.3 324,912 - SMa0607 0.83 +0.7 325,014 + +0.8 325,104 - -2.0 325,166 + -0.9 325,203 + -0.6 325,204 - -3.5 325,204 - -0.1 325,222 + -0.1 325,222 + +1.2 325,263 + +1.2 325,297 + SMa0609 0.12 -0.2 325,398 - SMa0609 0.30 -1.0 325,604 + SMa0609 0.66 +0.3 325,607 + SMa0609 0.66 -0.1 325,607 + SMa0609 0.66 -0.6 325,638 - SMa0609 0.72 +0.6 325,651 + SMa0609 0.74 -0.4 325,651 + SMa0609 0.74 -0.6 325,652 - SMa0609 0.74 +1.9 325,689 - SMa0609 0.80 -1.5 325,689 - SMa0609 0.80 -1.1 325,766 + -0.9 325,767 - +0.9 325,767 - +0.5 325,791 + +0.5 325,791 + +3.8 325,799 + +0.1 325,799 + +0.5 325,800 - -0.0 325,800 - +0.5 325,800 - -0.4 325,838 - +0.2 325,948 + SMa0610 0.16 +0.9 325,949 - SMa0610 0.16 -0.2 325,998 + SMa0610 0.22 -0.6 325,999 - SMa0610 0.22 -2.9 326,060 + SMa0610 0.29 -0.4 326,060 + SMa0610 0.29 -3.3 326,242 + SMa0610 0.51 -2.5 326,259 - SMa0610 0.52 -2.5 326,269 + SMa0610 0.54 +0.0 326,269 + SMa0610 0.54 -0.0 326,270 - SMa0610 0.54 +0.2 326,327 - SMa0610 0.60 -1.2 326,327 - SMa0610 0.60 -0.3 326,327 - SMa0610 0.60 +0.1 326,382 + SMa0610 0.67 -0.6 326,389 + SMa0610 0.68 +0.2 326,389 + SMa0610 0.68 -1.5 326,389 + SMa0610 0.68 -0.8 326,390 - SMa0610 0.68 +1.2 326,390 - SMa0610 0.68 -2.6 326,566 + SMa0610 0.88 -0.2 326,566 + SMa0610 0.88 -1.1 326,566 + SMa0610 0.88 -1.9 326,567 - SMa0610 0.88 -1.4 326,583 - -1.1 326,598 + +0.2 326,665 + +0.2 326,666 - +0.1 326,666 - -1.4 326,927 + -0.4 326,928 - +1.3 326,928 - +0.2 327,031 + -0.1 327,032 - +0.2 327,104 + -0.4 327,106 + -0.6 327,122 + -0.6 327,123 - +0.2 327,180 - SMa0612 0.13 -0.3 327,180 - SMa0612 0.13 +0.1 327,334 + SMa0612 0.22 +0.7 327,522 - SMa0612 0.33 +0.0 327,540 - SMa0612 0.34 -2.1 327,576 - SMa0612 0.36 -0.5 327,587 + SMa0612 0.37 -1.0 327,587 + SMa0612 0.37 +1.5 327,587 + SMa0612 0.37 +2.1 327,626 + SMa0612 0.39 -0.4 327,644 + SMa0612 0.41 -2.9 327,644 + SMa0612 0.41 -2.7 327,644 + SMa0612 0.41 +0.2 327,644 + SMa0612 0.41 +1.1 327,644 + SMa0612 0.41 -2.3 327,644 + SMa0612 0.41 +0.3 327,644 + SMa0612 0.41 +0.2 327,645 - SMa0612 0.41 +0.1 327,645 - SMa0612 0.41 +1.2 327,645 - SMa0612 0.41 +0.3 327,645 - SMa0612 0.41 -1.8
Or see this region's nucleotide sequence