Strain Fitness in Sinorhizobium meliloti 1021 around SMa0607

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0604 and SMa0606 overlap by 4 nucleotidesSMa0606 and SMa0607 are separated by 52 nucleotidesSMa0607 and SMa0609 are separated by 57 nucleotidesSMa0609 and SMa0610 are separated by 5 nucleotides SMa0604: SMa0604 - hypothetical protein, at 322,421 to 323,233 SMa0604 SMa0606: SMa0606 - hypothetical protein, at 323,230 to 323,565 SMa0606 SMa0607: SMa0607 - hypothetical protein, at 323,618 to 325,168 SMa0607 SMa0609: SMa0609 - hypothetical protein, at 325,226 to 325,801 SMa0609 SMa0610: SMa0610 - hypothetical protein, at 325,807 to 326,667 SMa0610 Position (kb) 323 324 325 326Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 322.621 kb on + strand, within SMa0604at 322.622 kb on - strand, within SMa0604at 322.664 kb on + strand, within SMa0604at 322.732 kb on + strand, within SMa0604at 322.733 kb on - strand, within SMa0604at 322.733 kb on - strand, within SMa0604at 322.776 kb on - strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.789 kb on + strand, within SMa0604at 322.790 kb on - strand, within SMa0604at 322.904 kb on + strand, within SMa0604at 322.905 kb on - strand, within SMa0604at 323.094 kb on - strand, within SMa0604at 323.131 kb on + strand, within SMa0604at 323.153 kb on - strandat 323.258 kb on - strandat 323.444 kb on - strand, within SMa0606at 323.498 kb on + strand, within SMa0606at 323.518 kb on + strand, within SMa0606at 323.519 kb on - strand, within SMa0606at 323.519 kb on - strand, within SMa0606at 323.519 kb on - strand, within SMa0606at 323.519 kb on - strand, within SMa0606at 323.519 kb on - strand, within SMa0606at 323.543 kb on - strandat 323.554 kb on + strandat 323.554 kb on + strandat 323.602 kb on - strandat 323.636 kb on + strandat 323.636 kb on + strandat 323.636 kb on + strandat 323.688 kb on - strandat 323.711 kb on + strandat 324.005 kb on + strand, within SMa0607at 324.006 kb on - strand, within SMa0607at 324.155 kb on + strand, within SMa0607at 324.156 kb on - strand, within SMa0607at 324.200 kb on - strand, within SMa0607at 324.219 kb on - strand, within SMa0607at 324.219 kb on - strand, within SMa0607at 324.221 kb on + strand, within SMa0607at 324.221 kb on + strand, within SMa0607at 324.222 kb on - strand, within SMa0607at 324.222 kb on - strand, within SMa0607at 324.329 kb on + strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.426 kb on - strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.740 kb on + strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.741 kb on - strand, within SMa0607at 324.742 kb on + strand, within SMa0607at 324.742 kb on + strand, within SMa0607at 324.801 kb on - strand, within SMa0607at 324.855 kb on - strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.867 kb on + strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 324.912 kb on - strand, within SMa0607at 325.014 kb on + strandat 325.104 kb on - strandat 325.166 kb on + strandat 325.203 kb on + strandat 325.204 kb on - strandat 325.204 kb on - strandat 325.222 kb on + strandat 325.222 kb on + strandat 325.263 kb on + strandat 325.297 kb on + strand, within SMa0609at 325.398 kb on - strand, within SMa0609at 325.604 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.607 kb on + strand, within SMa0609at 325.638 kb on - strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.651 kb on + strand, within SMa0609at 325.652 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.689 kb on - strand, within SMa0609at 325.766 kb on + strandat 325.767 kb on - strandat 325.767 kb on - strandat 325.791 kb on + strandat 325.791 kb on + strandat 325.799 kb on + strandat 325.799 kb on + strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.800 kb on - strandat 325.838 kb on - strandat 325.948 kb on + strand, within SMa0610at 325.949 kb on - strand, within SMa0610at 325.998 kb on + strand, within SMa0610at 325.999 kb on - strand, within SMa0610at 326.060 kb on + strand, within SMa0610at 326.060 kb on + strand, within SMa0610

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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322,621 + SMa0604 0.25 +0.9
322,622 - SMa0604 0.25 -0.2
322,664 + SMa0604 0.30 -0.0
322,732 + SMa0604 0.38 -1.1
322,733 - SMa0604 0.38 -1.8
322,733 - SMa0604 0.38 -0.0
322,776 - SMa0604 0.44 +1.6
322,789 + SMa0604 0.45 -0.3
322,789 + SMa0604 0.45 -1.4
322,789 + SMa0604 0.45 -0.2
322,790 - SMa0604 0.45 +0.6
322,904 + SMa0604 0.59 +0.4
322,905 - SMa0604 0.60 -1.4
323,094 - SMa0604 0.83 -2.0
323,131 + SMa0604 0.87 +0.6
323,153 - +0.7
323,258 - +0.1
323,444 - SMa0606 0.64 -0.6
323,498 + SMa0606 0.80 +0.1
323,518 + SMa0606 0.86 +1.3
323,519 - SMa0606 0.86 -0.3
323,519 - SMa0606 0.86 -0.2
323,519 - SMa0606 0.86 +0.7
323,519 - SMa0606 0.86 -1.3
323,519 - SMa0606 0.86 -1.8
323,543 - +0.1
323,554 + -0.8
323,554 + -0.5
323,602 - -0.5
323,636 + +0.1
323,636 + -0.3
323,636 + -1.7
323,688 - -0.3
323,711 + +1.0
324,005 + SMa0607 0.25 -0.8
324,006 - SMa0607 0.25 +0.4
324,155 + SMa0607 0.35 -0.4
324,156 - SMa0607 0.35 -0.1
324,200 - SMa0607 0.38 -0.9
324,219 - SMa0607 0.39 +0.1
324,219 - SMa0607 0.39 -0.3
324,221 + SMa0607 0.39 +2.2
324,221 + SMa0607 0.39 +0.9
324,222 - SMa0607 0.39 -3.3
324,222 - SMa0607 0.39 -0.7
324,329 + SMa0607 0.46 -0.0
324,426 - SMa0607 0.52 -0.4
324,426 - SMa0607 0.52 -1.0
324,426 - SMa0607 0.52 -0.7
324,740 + SMa0607 0.72 -0.3
324,740 + SMa0607 0.72 +1.1
324,740 + SMa0607 0.72 +0.3
324,740 + SMa0607 0.72 -0.1
324,741 - SMa0607 0.72 +0.8
324,741 - SMa0607 0.72 -0.4
324,741 - SMa0607 0.72 -2.5
324,741 - SMa0607 0.72 +0.3
324,742 + SMa0607 0.72 -1.3
324,742 + SMa0607 0.72 -2.0
324,801 - SMa0607 0.76 -1.4
324,855 - SMa0607 0.80 +0.1
324,867 + SMa0607 0.81 -0.7
324,867 + SMa0607 0.81 -2.8
324,912 - SMa0607 0.83 +0.3
324,912 - SMa0607 0.83 +0.7
325,014 + +0.8
325,104 - -2.0
325,166 + -0.9
325,203 + -0.6
325,204 - -3.5
325,204 - -0.1
325,222 + -0.1
325,222 + +1.2
325,263 + +1.2
325,297 + SMa0609 0.12 -0.2
325,398 - SMa0609 0.30 -1.0
325,604 + SMa0609 0.66 +0.3
325,607 + SMa0609 0.66 -0.1
325,607 + SMa0609 0.66 -0.6
325,638 - SMa0609 0.72 +0.6
325,651 + SMa0609 0.74 -0.4
325,651 + SMa0609 0.74 -0.6
325,652 - SMa0609 0.74 +1.9
325,689 - SMa0609 0.80 -1.5
325,689 - SMa0609 0.80 -1.1
325,766 + -0.9
325,767 - +0.9
325,767 - +0.5
325,791 + +0.5
325,791 + +3.8
325,799 + +0.1
325,799 + +0.5
325,800 - -0.0
325,800 - +0.5
325,800 - -0.4
325,838 - +0.2
325,948 + SMa0610 0.16 +0.9
325,949 - SMa0610 0.16 -0.2
325,998 + SMa0610 0.22 -0.6
325,999 - SMa0610 0.22 -2.9
326,060 + SMa0610 0.29 -0.4
326,060 + SMa0610 0.29 -3.3

Or see this region's nucleotide sequence