Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0433 and SMa0436 are separated by 217 nucleotides
SMa0433: SMa0433 - hypothetical protein, at 233,560 to 234,030
SMa0433
SMa0436: SMa0436 - hypothetical protein, at 234,248 to 234,631
SMa0436
Position (kb)
234
235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 233.342 kb on + strand at 233.414 kb on - strand at 233.414 kb on - strand at 233.419 kb on - strand at 233.603 kb on + strand at 233.604 kb on - strand at 233.698 kb on + strand, within SMa0433 at 233.704 kb on - strand, within SMa0433 at 234.087 kb on + strand at 234.087 kb on + strand at 234.087 kb on + strand at 234.088 kb on - strand at 234.194 kb on - strand at 234.194 kb on - strand at 234.286 kb on + strand at 234.287 kb on - strand, within SMa0436 at 234.287 kb on - strand, within SMa0436 at 234.359 kb on + strand, within SMa0436 at 234.359 kb on + strand, within SMa0436 at 234.360 kb on - strand, within SMa0436 at 234.366 kb on - strand, within SMa0436 at 234.366 kb on - strand, within SMa0436 at 234.372 kb on + strand, within SMa0436 at 234.373 kb on - strand, within SMa0436 at 234.403 kb on + strand, within SMa0436 at 234.403 kb on + strand, within SMa0436 at 234.410 kb on + strand, within SMa0436 at 234.492 kb on - strand, within SMa0436 at 234.592 kb on + strand, within SMa0436 at 234.593 kb on - strand at 234.715 kb on + strand at 234.725 kb on + strand at 234.726 kb on - strand at 234.726 kb on - strand at 234.742 kb on - strand at 234.747 kb on + strand at 234.755 kb on + strand at 234.755 kb on + strand at 234.756 kb on - strand at 234.883 kb on + strand at 234.884 kb on - strand at 234.884 kb on - strand at 234.925 kb on - strand at 234.976 kb on - strand at 234.976 kb on - strand at 235.011 kb on - strand at 235.200 kb on + strand at 235.200 kb on + strand at 235.200 kb on + strand at 235.237 kb on - strand at 235.258 kb on + strand at 235.258 kb on + strand at 235.259 kb on - strand at 235.290 kb on + strand at 235.291 kb on - strand at 235.312 kb on - strand at 235.360 kb on + strand at 235.445 kb on - strand at 235.477 kb on + strand at 235.478 kb on - strand at 235.478 kb on - strand at 235.478 kb on - strand at 235.494 kb on + strand at 235.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 233,342 + +0.5 233,414 - +0.5 233,414 - -0.1 233,419 - -0.3 233,603 + +2.5 233,604 - -0.8 233,698 + SMa0433 0.29 -0.8 233,704 - SMa0433 0.31 -0.8 234,087 + -0.3 234,087 + -2.2 234,087 + +0.1 234,088 - +0.1 234,194 - -2.1 234,194 - -0.3 234,286 + +1.8 234,287 - SMa0436 0.10 -0.6 234,287 - SMa0436 0.10 -0.3 234,359 + SMa0436 0.29 -1.4 234,359 + SMa0436 0.29 -1.7 234,360 - SMa0436 0.29 -0.1 234,366 - SMa0436 0.31 -1.8 234,366 - SMa0436 0.31 -0.3 234,372 + SMa0436 0.32 -0.8 234,373 - SMa0436 0.33 +1.0 234,403 + SMa0436 0.40 -0.2 234,403 + SMa0436 0.40 -0.2 234,410 + SMa0436 0.42 -0.5 234,492 - SMa0436 0.64 -0.9 234,592 + SMa0436 0.90 +0.7 234,593 - -0.2 234,715 + +0.5 234,725 + +1.0 234,726 - -0.8 234,726 - -0.8 234,742 - +0.4 234,747 + -0.2 234,755 + -0.2 234,755 + -0.9 234,756 - -1.1 234,883 + +0.1 234,884 - -0.7 234,884 - -0.1 234,925 - -0.4 234,976 - -1.5 234,976 - -0.6 235,011 - +0.9 235,200 + +0.1 235,200 + +0.6 235,200 + -1.3 235,237 - -1.4 235,258 + -0.5 235,258 + -0.8 235,259 - +1.5 235,290 + -0.4 235,291 - +0.6 235,312 - +0.3 235,360 + -1.9 235,445 - +0.5 235,477 + +2.2 235,478 - -0.0 235,478 - -1.8 235,478 - -0.6 235,494 + +2.2 235,505 - -0.7
Or see this region's nucleotide sequence