Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0403 and SMa0404 are separated by 1 nucleotides SMa0404 and SMa0405 are separated by 352 nucleotides SMa0405 and SMa0407 are separated by 352 nucleotides
SMa0403: SMa0403 - hypothetical protein, at 218,550 to 219,938
SMa0403
SMa0404: SMa0404 - FMN-dependent dehydrogenase, at 219,940 to 221,085
SMa0404
SMa0405: SMa0405 - transposase, fragment, at 221,438 to 221,725
SMa0405
SMa0407: SMa0407 - hypothetical protein, at 222,078 to 222,866
SMa0407
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 219.102 kb on + strand, within SMa0403 at 219.103 kb on - strand, within SMa0403 at 219.119 kb on + strand, within SMa0403 at 219.119 kb on + strand, within SMa0403 at 219.120 kb on - strand, within SMa0403 at 219.181 kb on + strand, within SMa0403 at 219.182 kb on - strand, within SMa0403 at 219.228 kb on + strand, within SMa0403 at 219.228 kb on + strand, within SMa0403 at 219.229 kb on - strand, within SMa0403 at 219.316 kb on - strand, within SMa0403 at 219.562 kb on - strand, within SMa0403 at 219.562 kb on - strand, within SMa0403 at 219.588 kb on + strand, within SMa0403 at 219.676 kb on + strand, within SMa0403 at 219.842 kb on - strand at 219.842 kb on - strand at 219.896 kb on - strand at 220.009 kb on + strand at 220.010 kb on - strand at 220.012 kb on - strand at 220.074 kb on - strand, within SMa0404 at 220.129 kb on + strand, within SMa0404 at 220.254 kb on - strand, within SMa0404 at 220.324 kb on + strand, within SMa0404 at 220.325 kb on - strand, within SMa0404 at 220.362 kb on - strand, within SMa0404 at 220.376 kb on - strand, within SMa0404 at 220.419 kb on + strand, within SMa0404 at 220.848 kb on + strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.849 kb on - strand, within SMa0404 at 220.933 kb on + strand, within SMa0404 at 220.939 kb on + strand, within SMa0404 at 221.006 kb on - strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.160 kb on + strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.161 kb on - strand at 221.209 kb on + strand at 221.209 kb on + strand at 221.297 kb on + strand at 221.297 kb on + strand at 221.526 kb on - strand, within SMa0405 at 221.526 kb on - strand, within SMa0405 at 221.698 kb on + strand at 221.699 kb on - strand at 221.813 kb on + strand at 221.822 kb on - strand at 221.854 kb on + strand at 221.888 kb on - strand at 221.941 kb on + strand at 221.942 kb on - strand at 222.055 kb on + strand at 222.055 kb on + strand at 222.056 kb on - strand at 222.062 kb on + strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.063 kb on - strand at 222.069 kb on + strand at 222.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 219,102 + SMa0403 0.40 -1.3 219,103 - SMa0403 0.40 -1.1 219,119 + SMa0403 0.41 +0.2 219,119 + SMa0403 0.41 -0.1 219,120 - SMa0403 0.41 -0.1 219,181 + SMa0403 0.45 +0.3 219,182 - SMa0403 0.46 -0.8 219,228 + SMa0403 0.49 +1.5 219,228 + SMa0403 0.49 +1.5 219,229 - SMa0403 0.49 -0.5 219,316 - SMa0403 0.55 +0.5 219,562 - SMa0403 0.73 +0.4 219,562 - SMa0403 0.73 +0.1 219,588 + SMa0403 0.75 -0.7 219,676 + SMa0403 0.81 -0.1 219,842 - -1.9 219,842 - -2.1 219,896 - +1.1 220,009 + -0.8 220,010 - +0.5 220,012 - -1.3 220,074 - SMa0404 0.12 -1.1 220,129 + SMa0404 0.16 +3.4 220,254 - SMa0404 0.27 -1.0 220,324 + SMa0404 0.34 -0.9 220,325 - SMa0404 0.34 -0.8 220,362 - SMa0404 0.37 -1.0 220,376 - SMa0404 0.38 +0.3 220,419 + SMa0404 0.42 +0.2 220,848 + SMa0404 0.79 -0.6 220,849 - SMa0404 0.79 -0.2 220,849 - SMa0404 0.79 -0.4 220,933 + SMa0404 0.87 -0.6 220,939 + SMa0404 0.87 -0.3 221,006 - +0.6 221,160 + -0.2 221,160 + -0.4 221,160 + +0.4 221,161 - +0.1 221,161 - -0.6 221,161 - -1.3 221,209 + +0.2 221,209 + -0.7 221,297 + +0.8 221,297 + +0.4 221,526 - SMa0405 0.31 +0.2 221,526 - SMa0405 0.31 -0.3 221,698 + -0.3 221,699 - +2.8 221,813 + -0.1 221,822 - +1.2 221,854 + -1.1 221,888 - +1.3 221,941 + -0.3 221,942 - +0.1 222,055 + +0.4 222,055 + +1.2 222,056 - -0.7 222,062 + +3.0 222,063 - +0.1 222,063 - -0.6 222,063 - -1.1 222,069 + +1.0 222,070 - +0.2
Or see this region's nucleotide sequence