Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0398 and SMa0400 are separated by 3 nucleotides SMa0400 and SMa0402 are separated by 62 nucleotides SMa0402 and SMa0403 overlap by 53 nucleotides
SMa0398: SMa0398 - histidinol dehydrogenase, at 215,421 to 216,791
SMa0398
SMa0400: SMa0400 - Dehydrogenase, Zn-dependent, at 216,795 to 217,808
SMa0400
SMa0402: SMa0402 - GntR family transcriptional regulator, at 217,871 to 218,602
SMa0402
SMa0403: SMa0403 - hypothetical protein, at 218,550 to 219,938
SMa0403
Position (kb) 216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.895 kb on - strand, within SMa0398 at 216.064 kb on - strand at 216.276 kb on + strand, within SMa0398 at 216.277 kb on - strand, within SMa0398 at 216.433 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.543 kb on - strand, within SMa0398 at 216.720 kb on + strand at 216.720 kb on + strand at 216.720 kb on + strand at 216.771 kb on + strand at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 216.928 kb on - strand, within SMa0400 at 217.346 kb on - strand, within SMa0400 at 217.503 kb on - strand, within SMa0400 at 217.578 kb on - strand, within SMa0400 at 217.746 kb on + strand at 217.877 kb on - strand at 217.877 kb on - strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.915 kb on - strand at 218.161 kb on + strand, within SMa0402 at 218.316 kb on - strand, within SMa0402 at 218.376 kb on - strand, within SMa0402 at 218.376 kb on - strand, within SMa0402 at 218.381 kb on + strand, within SMa0402 at 218.381 kb on + strand, within SMa0402 at 218.549 kb on + strand at 218.549 kb on + strand at 218.550 kb on - strand at 218.550 kb on - strand at 218.550 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.614 kb on - strand at 218.678 kb on - strand at 218.787 kb on + strand, within SMa0403 at 218.787 kb on + strand, within SMa0403 at 218.788 kb on - strand, within SMa0403
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 215,895 - SMa0398 0.35 +0.7 216,064 - -0.8 216,276 + SMa0398 0.62 -0.5 216,277 - SMa0398 0.62 +1.6 216,433 - SMa0398 0.74 -2.0 216,543 - SMa0398 0.82 -0.3 216,543 - SMa0398 0.82 +2.2 216,720 + -1.6 216,720 + -1.1 216,720 + -0.1 216,771 + +0.4 216,928 - SMa0400 0.13 +1.4 216,928 - SMa0400 0.13 -0.5 216,928 - SMa0400 0.13 -0.2 217,346 - SMa0400 0.54 -0.6 217,503 - SMa0400 0.70 +1.5 217,578 - SMa0400 0.77 +0.5 217,746 + -0.4 217,877 - -2.3 217,877 - -0.2 217,914 + +0.2 217,914 + -2.3 217,915 - -1.7 218,161 + SMa0402 0.40 +0.0 218,316 - SMa0402 0.61 -1.1 218,376 - SMa0402 0.69 -2.5 218,376 - SMa0402 0.69 -0.4 218,381 + SMa0402 0.70 -0.4 218,381 + SMa0402 0.70 +1.0 218,549 + -2.2 218,549 + -0.3 218,550 - -2.3 218,550 - +0.3 218,550 - -0.7 218,614 - -0.9 218,614 - -0.3 218,614 - -1.5 218,678 - -1.0 218,787 + SMa0403 0.17 -0.6 218,787 + SMa0403 0.17 -2.5 218,788 - SMa0403 0.17 +1.5
Or see this region's nucleotide sequence