Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0343 and SMa0346 are separated by 3 nucleotides SMa0346 and SMa0347 are separated by 47 nucleotides SMa0347 and SMa0349 are separated by 308 nucleotides SMa0349 and SMa0352 are separated by 35 nucleotides
SMa0343: SMa0343 - hypothetical protein, at 186,903 to 187,337
SMa0343
SMa0346: SMa0346 - NAD(P)H dehydrogenase, at 187,341 to 187,958
SMa0346
SMa0347: SMa0347 - LysR family transcriptional regulator, at 188,006 to 188,893
SMa0347
SMa0349: SMa0349 - hypothetical protein, at 189,202 to 189,798
SMa0349
SMa0352: SMa0352 - hypothetical protein, at 189,834 to 190,730
SMa0352
Position (kb) 188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.072 kb on + strand at 187.198 kb on - strand, within SMa0343 at 187.198 kb on - strand, within SMa0343 at 187.362 kb on + strand at 187.453 kb on + strand, within SMa0346 at 187.454 kb on - strand, within SMa0346 at 187.518 kb on + strand, within SMa0346 at 187.634 kb on - strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.642 kb on + strand, within SMa0346 at 187.643 kb on - strand, within SMa0346 at 187.699 kb on + strand, within SMa0346 at 187.728 kb on - strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.778 kb on + strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.779 kb on - strand, within SMa0346 at 187.967 kb on + strand at 187.986 kb on + strand at 187.986 kb on + strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.987 kb on - strand at 187.993 kb on + strand at 187.993 kb on + strand at 187.997 kb on - strand at 188.028 kb on + strand at 188.179 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.224 kb on + strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.225 kb on - strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.242 kb on + strand, within SMa0347 at 188.243 kb on - strand, within SMa0347 at 188.272 kb on - strand, within SMa0347 at 188.358 kb on + strand at 188.359 kb on - strand, within SMa0347 at 188.516 kb on + strand, within SMa0347 at 188.516 kb on + strand, within SMa0347 at 188.516 kb on - strand, within SMa0347 at 188.517 kb on - strand, within SMa0347 at 188.566 kb on + strand, within SMa0347 at 188.871 kb on + strand at 188.871 kb on + strand at 188.872 kb on - strand at 188.902 kb on + strand at 188.903 kb on - strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.029 kb on + strand at 189.030 kb on - strand at 189.093 kb on - strand at 189.106 kb on + strand at 189.197 kb on + strand at 189.252 kb on + strand at 189.472 kb on - strand, within SMa0349 at 189.570 kb on + strand, within SMa0349 at 189.594 kb on - strand, within SMa0349
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 187,072 + +1.7 187,198 - SMa0343 0.68 -0.3 187,198 - SMa0343 0.68 +0.2 187,362 + +0.6 187,453 + SMa0346 0.18 -0.7 187,454 - SMa0346 0.18 +1.7 187,518 + SMa0346 0.29 +1.3 187,634 - SMa0346 0.47 -0.7 187,642 + SMa0346 0.49 -1.0 187,642 + SMa0346 0.49 -2.0 187,643 - SMa0346 0.49 +0.5 187,699 + SMa0346 0.58 -1.1 187,728 - SMa0346 0.63 +0.7 187,778 + SMa0346 0.71 +0.7 187,778 + SMa0346 0.71 -0.1 187,778 + SMa0346 0.71 -2.1 187,779 - SMa0346 0.71 -1.2 187,779 - SMa0346 0.71 -0.3 187,779 - SMa0346 0.71 -0.6 187,967 + +0.6 187,986 + -0.2 187,986 + +0.1 187,987 - -1.3 187,987 - +0.3 187,987 - -0.5 187,987 - +2.2 187,987 - -0.1 187,993 + +1.3 187,993 + -1.1 187,997 - +0.6 188,028 + -0.2 188,179 + SMa0347 0.19 -2.9 188,224 + SMa0347 0.25 -1.5 188,224 + SMa0347 0.25 -1.1 188,224 + SMa0347 0.25 -1.5 188,225 - SMa0347 0.25 -0.9 188,225 - SMa0347 0.25 -2.4 188,242 + SMa0347 0.27 -0.0 188,242 + SMa0347 0.27 -1.3 188,243 - SMa0347 0.27 +0.0 188,272 - SMa0347 0.30 -0.7 188,358 + +0.3 188,359 - SMa0347 0.40 -3.1 188,516 + SMa0347 0.57 +0.7 188,516 + SMa0347 0.57 -0.3 188,516 - SMa0347 0.57 -1.1 188,517 - SMa0347 0.58 -0.3 188,566 + SMa0347 0.63 +0.0 188,871 + +1.0 188,871 + -0.5 188,872 - -3.0 188,902 + +1.3 188,903 - -1.8 189,029 + -0.0 189,029 + -1.8 189,029 + -0.0 189,030 - +0.4 189,093 - +0.6 189,106 + -2.1 189,197 + +0.2 189,252 + -0.5 189,472 - SMa0349 0.45 -0.5 189,570 + SMa0349 0.62 +0.7 189,594 - SMa0349 0.66 -0.1
Or see this region's nucleotide sequence