Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0204 and SMa0206 overlap by 4 nucleotides SMa0206 and SMa0209 are separated by 124 nucleotides SMa0209 and SMa0210 are separated by 94 nucleotides SMa0210 and SMa0211 are separated by 142 nucleotides SMa0211 and SMa0214 are separated by 217 nucleotides
SMa0204: SMa0204 - sensor histidine kinase, at 112,578 to 113,825
SMa0204
SMa0206: SMa0206 - Response regulator, at 113,822 to 114,544
SMa0206
SMa0209: SMa0209 - hypothetical protein, at 114,669 to 115,757
SMa0209
SMa0210: SMa0210 - hypothetical protein, at 115,852 to 116,118
SMa0210
SMa0211: SMa0211 - hypothetical protein, at 116,261 to 116,455
SMa0211
SMa0214: SMa0214 - 5-keto-4-deoxyuronate isomerase, at 116,673 to 117,515
SMa0214
Position (kb)
114
115
116 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 113.747 kb on + strand at 113.748 kb on - strand at 113.748 kb on - strand at 113.748 kb on - strand at 113.864 kb on + strand at 113.864 kb on + strand at 113.865 kb on - strand at 113.959 kb on + strand, within SMa0206 at 113.971 kb on + strand, within SMa0206 at 114.086 kb on + strand, within SMa0206 at 114.086 kb on + strand, within SMa0206 at 114.087 kb on - strand, within SMa0206 at 114.087 kb on - strand, within SMa0206 at 114.134 kb on + strand, within SMa0206 at 114.310 kb on + strand, within SMa0206 at 114.311 kb on - strand, within SMa0206 at 114.398 kb on + strand, within SMa0206 at 114.489 kb on - strand at 114.489 kb on - strand at 114.519 kb on + strand at 114.600 kb on + strand at 114.601 kb on - strand at 114.629 kb on - strand at 114.649 kb on + strand at 114.693 kb on + strand at 114.801 kb on + strand, within SMa0209 at 114.807 kb on + strand, within SMa0209 at 114.807 kb on + strand, within SMa0209 at 114.837 kb on - strand, within SMa0209 at 114.837 kb on - strand, within SMa0209 at 114.849 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.853 kb on + strand, within SMa0209 at 114.980 kb on + strand, within SMa0209 at 115.067 kb on + strand, within SMa0209 at 115.067 kb on + strand, within SMa0209 at 115.068 kb on - strand, within SMa0209 at 115.071 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.274 kb on + strand, within SMa0209 at 115.275 kb on - strand, within SMa0209 at 115.275 kb on - strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.278 kb on + strand, within SMa0209 at 115.279 kb on - strand, within SMa0209 at 115.279 kb on - strand, within SMa0209 at 115.280 kb on + strand, within SMa0209 at 115.281 kb on - strand, within SMa0209 at 115.317 kb on + strand, within SMa0209 at 115.317 kb on + strand, within SMa0209 at 115.318 kb on - strand, within SMa0209 at 115.318 kb on - strand, within SMa0209 at 115.464 kb on + strand, within SMa0209 at 115.465 kb on - strand, within SMa0209 at 115.569 kb on - strand, within SMa0209 at 115.604 kb on - strand, within SMa0209 at 115.604 kb on - strand, within SMa0209 at 115.606 kb on + strand, within SMa0209 at 115.606 kb on + strand, within SMa0209 at 115.608 kb on + strand, within SMa0209 at 115.608 kb on + strand, within SMa0209 at 115.609 kb on - strand, within SMa0209 at 115.609 kb on - strand, within SMa0209 at 115.697 kb on + strand at 115.698 kb on - strand at 115.756 kb on - strand at 115.756 kb on - strand at 115.756 kb on - strand at 115.782 kb on + strand at 115.895 kb on + strand, within SMa0210 at 115.960 kb on + strand, within SMa0210 at 115.960 kb on + strand, within SMa0210 at 116.009 kb on + strand, within SMa0210 at 116.010 kb on - strand, within SMa0210 at 116.020 kb on + strand, within SMa0210 at 116.020 kb on + strand, within SMa0210 at 116.123 kb on - strand at 116.132 kb on - strand at 116.284 kb on + strand, within SMa0211 at 116.292 kb on - strand, within SMa0211 at 116.544 kb on + strand at 116.604 kb on + strand at 116.605 kb on - strand at 116.670 kb on + strand at 116.670 kb on + strand at 116.670 kb on + strand at 116.670 kb on + strand at 116.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 113,747 + -0.8 113,748 - +3.2 113,748 - -0.7 113,748 - -0.0 113,864 + -2.2 113,864 + -1.3 113,865 - +0.2 113,959 + SMa0206 0.19 -0.3 113,971 + SMa0206 0.21 -0.0 114,086 + SMa0206 0.37 -2.2 114,086 + SMa0206 0.37 +3.6 114,087 - SMa0206 0.37 -1.6 114,087 - SMa0206 0.37 +0.5 114,134 + SMa0206 0.43 +2.9 114,310 + SMa0206 0.67 -1.3 114,311 - SMa0206 0.68 +0.9 114,398 + SMa0206 0.80 +0.2 114,489 - -1.0 114,489 - -2.5 114,519 + -2.7 114,600 + -1.0 114,601 - +0.1 114,629 - +0.1 114,649 + +0.9 114,693 + +0.6 114,801 + SMa0209 0.12 +0.1 114,807 + SMa0209 0.13 -1.9 114,807 + SMa0209 0.13 -0.4 114,837 - SMa0209 0.15 -0.4 114,837 - SMa0209 0.15 -1.9 114,849 + SMa0209 0.17 -1.4 114,853 + SMa0209 0.17 +0.2 114,853 + SMa0209 0.17 -0.2 114,853 + SMa0209 0.17 +1.1 114,853 + SMa0209 0.17 -1.4 114,980 + SMa0209 0.29 -0.6 115,067 + SMa0209 0.37 -1.0 115,067 + SMa0209 0.37 +0.1 115,068 - SMa0209 0.37 +0.5 115,071 + SMa0209 0.37 -1.6 115,274 + SMa0209 0.56 -0.8 115,274 + SMa0209 0.56 +0.6 115,274 + SMa0209 0.56 +0.5 115,275 - SMa0209 0.56 -1.0 115,275 - SMa0209 0.56 +0.1 115,278 + SMa0209 0.56 +0.4 115,278 + SMa0209 0.56 -1.6 115,278 + SMa0209 0.56 -0.5 115,278 + SMa0209 0.56 -1.5 115,279 - SMa0209 0.56 -1.0 115,279 - SMa0209 0.56 -1.2 115,280 + SMa0209 0.56 -1.0 115,281 - SMa0209 0.56 -0.8 115,317 + SMa0209 0.60 -0.6 115,317 + SMa0209 0.60 -0.1 115,318 - SMa0209 0.60 +1.4 115,318 - SMa0209 0.60 +3.3 115,464 + SMa0209 0.73 -1.0 115,465 - SMa0209 0.73 +0.2 115,569 - SMa0209 0.83 -1.6 115,604 - SMa0209 0.86 -1.0 115,604 - SMa0209 0.86 -1.5 115,606 + SMa0209 0.86 -1.9 115,606 + SMa0209 0.86 -0.1 115,608 + SMa0209 0.86 -1.1 115,608 + SMa0209 0.86 -1.3 115,609 - SMa0209 0.86 +0.6 115,609 - SMa0209 0.86 -0.8 115,697 + -1.0 115,698 - -2.4 115,756 - -1.8 115,756 - -0.6 115,756 - -0.3 115,782 + -0.5 115,895 + SMa0210 0.16 -1.7 115,960 + SMa0210 0.40 +2.3 115,960 + SMa0210 0.40 -0.0 116,009 + SMa0210 0.59 -1.3 116,010 - SMa0210 0.59 +0.8 116,020 + SMa0210 0.63 +0.0 116,020 + SMa0210 0.63 -0.7 116,123 - +0.2 116,132 - +0.5 116,284 + SMa0211 0.12 +0.1 116,292 - SMa0211 0.16 +0.2 116,544 + +0.2 116,604 + +1.1 116,605 - -1.4 116,670 + -0.3 116,670 + +0.3 116,670 + -0.0 116,670 + +1.7 116,675 - -1.0
Or see this region's nucleotide sequence