Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0196 and SMa0197 are separated by 14 nucleotides SMa0197 and SMa0198 overlap by 4 nucleotides SMa0198 and SMa0199 overlap by 4 nucleotides
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
SMa0197: SMa0197 - ABC transporter permease, at 107,878 to 108,825
SMa0197
SMa0198: SMa0198 - ABC transporter permease, at 108,822 to 109,769
SMa0198
SMa0199: SMa0199 - ABC transporter ATP-binding protein, at 109,766 to 111,229
SMa0199
Position (kb)
107
108
109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196 at 107.424 kb on + strand, within SMa0196 at 107.425 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.452 kb on - strand, within SMa0196 at 107.629 kb on + strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.630 kb on - strand, within SMa0196 at 107.781 kb on + strand at 107.782 kb on - strand at 107.844 kb on + strand at 107.969 kb on + strand at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.182 kb on + strand, within SMa0197 at 108.269 kb on + strand, within SMa0197 at 108.270 kb on - strand, within SMa0197 at 108.361 kb on - strand, within SMa0197 at 108.489 kb on + strand, within SMa0197 at 108.491 kb on + strand, within SMa0197 at 108.492 kb on - strand, within SMa0197 at 108.813 kb on + strand at 109.116 kb on + strand, within SMa0198 at 109.117 kb on - strand, within SMa0198 at 109.145 kb on - strand, within SMa0198 at 109.272 kb on + strand, within SMa0198 at 109.273 kb on - strand, within SMa0198 at 109.465 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.663 kb on + strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.664 kb on - strand, within SMa0198 at 109.795 kb on + strand at 109.795 kb on + strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand at 109.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 106,950 + +0.2 106,981 - -1.1 106,989 + +0.9 107,243 + SMa0196 0.32 -0.1 107,424 + SMa0196 0.52 +0.2 107,425 - SMa0196 0.52 -0.3 107,452 - SMa0196 0.55 +0.7 107,452 - SMa0196 0.55 -0.7 107,452 - SMa0196 0.55 -0.3 107,629 + SMa0196 0.74 +0.1 107,630 - SMa0196 0.74 -1.5 107,630 - SMa0196 0.74 -1.7 107,781 + +0.2 107,782 - -0.1 107,844 + -0.6 107,969 + -2.1 108,182 + SMa0197 0.32 -1.3 108,182 + SMa0197 0.32 -2.8 108,182 + SMa0197 0.32 -2.7 108,269 + SMa0197 0.41 +0.7 108,270 - SMa0197 0.41 +1.5 108,361 - SMa0197 0.51 +0.1 108,489 + SMa0197 0.64 -0.1 108,491 + SMa0197 0.65 +1.0 108,492 - SMa0197 0.65 +1.1 108,813 + +0.2 109,116 + SMa0198 0.31 -0.5 109,117 - SMa0198 0.31 +0.2 109,145 - SMa0198 0.34 +0.3 109,272 + SMa0198 0.47 +0.7 109,273 - SMa0198 0.48 -0.7 109,465 + SMa0198 0.68 +0.2 109,663 + SMa0198 0.89 -1.2 109,663 + SMa0198 0.89 +0.7 109,663 + SMa0198 0.89 -0.7 109,663 + SMa0198 0.89 -2.2 109,663 + SMa0198 0.89 -1.1 109,663 + SMa0198 0.89 -0.4 109,663 + SMa0198 0.89 -0.6 109,664 - SMa0198 0.89 -0.1 109,664 - SMa0198 0.89 -0.3 109,664 - SMa0198 0.89 -3.0 109,664 - SMa0198 0.89 -0.2 109,795 + -0.2 109,795 + -0.6 109,796 - -0.9 109,796 - -1.1 109,796 - +0.1 109,796 - -0.2
Or see this region's nucleotide sequence