Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0105 and SMa0106 are separated by 5 nucleotides SMa0106 and SMa0108 overlap by 4 nucleotides SMa0108 and SMa0110 overlap by 4 nucleotides
SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559
SMa0105
SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386
SMa0106
SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297
SMa0108
SMa0110: SMa0110 - ABC transporter ATP-binding protein, at 57,294 to 58,256
SMa0110
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 55.524 kb on + strand at 55.525 kb on - strand at 55.847 kb on + strand, within SMa0106 at 55.984 kb on + strand, within SMa0106 at 56.048 kb on + strand, within SMa0106 at 56.049 kb on - strand, within SMa0106 at 56.128 kb on + strand, within SMa0106 at 56.497 kb on + strand, within SMa0108 at 56.497 kb on + strand, within SMa0108 at 56.580 kb on - strand, within SMa0108 at 56.840 kb on - strand, within SMa0108 at 56.876 kb on + strand, within SMa0108 at 56.969 kb on + strand, within SMa0108 at 56.970 kb on - strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.139 kb on - strand, within SMa0108 at 57.603 kb on + strand, within SMa0110 at 57.603 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 58.050 kb on - strand, within SMa0110 at 58.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 55,524 + -3.9 55,525 - -1.0 55,847 + SMa0106 0.34 -1.2 55,984 + SMa0106 0.51 -2.0 56,048 + SMa0106 0.59 -1.7 56,049 - SMa0106 0.59 -2.7 56,128 + SMa0106 0.68 -2.7 56,497 + SMa0108 0.12 -0.4 56,497 + SMa0108 0.12 -1.0 56,580 - SMa0108 0.22 +0.7 56,840 - SMa0108 0.50 -0.1 56,876 + SMa0108 0.54 -0.6 56,969 + SMa0108 0.64 -1.5 56,970 - SMa0108 0.64 -0.7 57,073 + SMa0108 0.75 +0.5 57,073 + SMa0108 0.75 -1.3 57,136 + SMa0108 0.82 -1.3 57,136 + SMa0108 0.82 -1.2 57,136 + SMa0108 0.82 -1.9 57,137 - SMa0108 0.82 -1.1 57,137 - SMa0108 0.82 +1.0 57,139 - SMa0108 0.83 -1.3 57,603 + SMa0110 0.32 -1.9 57,603 + SMa0110 0.32 +0.2 57,959 + SMa0110 0.69 -1.5 57,959 + SMa0110 0.69 -1.5 57,959 + SMa0110 0.69 +1.3 57,959 + SMa0110 0.69 +0.4 57,960 - SMa0110 0.69 -0.4 57,960 - SMa0110 0.69 -2.7 58,050 - SMa0110 0.79 -1.2 58,233 - +0.7
Or see this region's nucleotide sequence