Strain Fitness in Sinorhizobium meliloti 1021 around SM_b22020

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20489 and SM_b20490 overlap by 8 nucleotidesSM_b20490 and SM_b22020 are separated by 107 nucleotidesSM_b22020 and SM_b20491 are separated by 188 nucleotides SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819 _b20489 SM_b20490: SM_b20490 - L-fuculose phosphate aldolase, at 506,812 to 507,510 _b20490 SM_b22020: SM_b22020 - hypothetical protein, at 507,618 to 508,478 _b22020 SM_b20491: SM_b20491 - hypothetical protein, at 508,667 to 509,245 _b20491 Position (kb) 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 506.965 kb on + strand, within SM_b20490at 506.966 kb on - strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.016 kb on + strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.017 kb on - strand, within SM_b20490at 507.112 kb on + strand, within SM_b20490at 507.113 kb on - strand, within SM_b20490at 507.160 kb on + strand, within SM_b20490at 507.160 kb on + strand, within SM_b20490at 507.205 kb on + strand, within SM_b20490at 507.296 kb on + strand, within SM_b20490at 507.364 kb on + strand, within SM_b20490at 507.364 kb on + strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.365 kb on - strand, within SM_b20490at 507.619 kb on + strandat 507.620 kb on - strandat 507.620 kb on - strandat 507.628 kb on + strandat 507.771 kb on - strand, within SM_b22020at 507.775 kb on - strand, within SM_b22020at 507.775 kb on - strand, within SM_b22020at 507.844 kb on + strand, within SM_b22020at 507.844 kb on + strand, within SM_b22020at 507.845 kb on - strand, within SM_b22020at 507.845 kb on - strand, within SM_b22020at 507.860 kb on + strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.861 kb on - strand, within SM_b22020at 507.976 kb on - strand, within SM_b22020at 507.976 kb on - strand, within SM_b22020at 508.016 kb on + strand, within SM_b22020at 508.017 kb on - strand, within SM_b22020at 508.017 kb on - strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.109 kb on + strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.110 kb on - strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.111 kb on + strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.112 kb on - strand, within SM_b22020at 508.117 kb on + strand, within SM_b22020at 508.118 kb on - strand, within SM_b22020at 508.207 kb on + strand, within SM_b22020at 508.322 kb on - strand, within SM_b22020at 508.322 kb on - strand, within SM_b22020at 508.348 kb on - strand, within SM_b22020at 508.389 kb on + strand, within SM_b22020at 508.515 kb on + strandat 508.516 kb on - strandat 508.516 kb on - strandat 508.596 kb on - strandat 508.617 kb on + strandat 508.618 kb on - strandat 508.699 kb on + strandat 508.700 kb on - strandat 508.775 kb on + strand, within SM_b20491at 508.865 kb on + strand, within SM_b20491at 508.866 kb on - strand, within SM_b20491at 508.896 kb on - strand, within SM_b20491at 508.903 kb on + strand, within SM_b20491at 508.904 kb on - strand, within SM_b20491at 508.933 kb on - strand, within SM_b20491at 509.043 kb on + strand, within SM_b20491at 509.046 kb on + strand, within SM_b20491at 509.047 kb on - strand, within SM_b20491at 509.153 kb on + strand, within SM_b20491at 509.170 kb on + strand, within SM_b20491at 509.171 kb on - strand, within SM_b20491at 509.185 kb on + strand, within SM_b20491at 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.209 kb on + strandat 509.210 kb on - strandat 509.213 kb on + strandat 509.213 kb on + strandat 509.213 kb on + strandat 509.214 kb on - strandat 509.251 kb on - strandat 509.263 kb on + strandat 509.263 kb on + strandat 509.264 kb on - strandat 509.298 kb on + strandat 509.387 kb on + strandat 509.388 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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506,965 + SM_b20490 0.22 -1.0
506,966 - SM_b20490 0.22 +0.0
507,016 + SM_b20490 0.29 -0.3
507,016 + SM_b20490 0.29 -1.6
507,016 + SM_b20490 0.29 -0.3
507,016 + SM_b20490 0.29 +2.1
507,016 + SM_b20490 0.29 -1.1
507,017 - SM_b20490 0.29 -0.3
507,017 - SM_b20490 0.29 +0.9
507,017 - SM_b20490 0.29 -0.8
507,017 - SM_b20490 0.29 +0.0
507,017 - SM_b20490 0.29 -0.2
507,112 + SM_b20490 0.43 +0.2
507,113 - SM_b20490 0.43 -3.3
507,160 + SM_b20490 0.50 +0.9
507,160 + SM_b20490 0.50 +2.0
507,205 + SM_b20490 0.56 -0.4
507,296 + SM_b20490 0.69 -2.4
507,364 + SM_b20490 0.79 +0.6
507,364 + SM_b20490 0.79 -0.2
507,365 - SM_b20490 0.79 +0.8
507,365 - SM_b20490 0.79 -1.8
507,365 - SM_b20490 0.79 +0.1
507,365 - SM_b20490 0.79 -2.8
507,619 + -0.1
507,620 - +0.1
507,620 - -0.1
507,628 + +1.0
507,771 - SM_b22020 0.18 +0.0
507,775 - SM_b22020 0.18 -1.8
507,775 - SM_b22020 0.18 -0.9
507,844 + SM_b22020 0.26 +1.0
507,844 + SM_b22020 0.26 -1.0
507,845 - SM_b22020 0.26 +0.6
507,845 - SM_b22020 0.26 -1.2
507,860 + SM_b22020 0.28 -1.6
507,861 - SM_b22020 0.28 -0.4
507,861 - SM_b22020 0.28 +0.9
507,861 - SM_b22020 0.28 -0.2
507,976 - SM_b22020 0.42 -1.1
507,976 - SM_b22020 0.42 -0.3
508,016 + SM_b22020 0.46 +0.2
508,017 - SM_b22020 0.46 -0.1
508,017 - SM_b22020 0.46 +1.4
508,109 + SM_b22020 0.57 +0.3
508,109 + SM_b22020 0.57 -2.0
508,109 + SM_b22020 0.57 +0.8
508,109 + SM_b22020 0.57 -2.0
508,109 + SM_b22020 0.57 -0.9
508,110 - SM_b22020 0.57 +0.2
508,110 - SM_b22020 0.57 -0.9
508,110 - SM_b22020 0.57 +1.8
508,110 - SM_b22020 0.57 +0.0
508,111 + SM_b22020 0.57 +2.8
508,111 + SM_b22020 0.57 +0.1
508,111 + SM_b22020 0.57 +0.4
508,111 + SM_b22020 0.57 -0.5
508,112 - SM_b22020 0.57 -0.1
508,112 - SM_b22020 0.57 -2.0
508,112 - SM_b22020 0.57 +0.3
508,112 - SM_b22020 0.57 +0.5
508,117 + SM_b22020 0.58 +0.1
508,118 - SM_b22020 0.58 -1.0
508,207 + SM_b22020 0.68 -0.6
508,322 - SM_b22020 0.82 -3.1
508,322 - SM_b22020 0.82 -1.5
508,348 - SM_b22020 0.85 +0.6
508,389 + SM_b22020 0.90 -0.4
508,515 + +0.9
508,516 - -1.0
508,516 - +0.3
508,596 - +0.2
508,617 + +0.5
508,618 - +0.9
508,699 + -0.2
508,700 - -0.7
508,775 + SM_b20491 0.19 -0.7
508,865 + SM_b20491 0.34 +0.2
508,866 - SM_b20491 0.34 +0.7
508,896 - SM_b20491 0.40 +0.9
508,903 + SM_b20491 0.41 -0.1
508,904 - SM_b20491 0.41 -0.2
508,933 - SM_b20491 0.46 -0.4
509,043 + SM_b20491 0.65 +0.2
509,046 + SM_b20491 0.65 -0.2
509,047 - SM_b20491 0.66 -0.7
509,153 + SM_b20491 0.84 -2.7
509,170 + SM_b20491 0.87 -0.4
509,171 - SM_b20491 0.87 -1.1
509,185 + SM_b20491 0.89 +0.1
509,209 + +1.2
509,209 + +2.4
509,209 + +0.2
509,209 + +1.2
509,209 + -0.1
509,210 - +0.2
509,213 + +0.2
509,213 + +0.9
509,213 + +0.2
509,214 - -2.7
509,251 - +3.0
509,263 + +0.8
509,263 + -1.3
509,264 - -0.8
509,298 + +0.3
509,387 + -0.6
509,388 - -0.1

Or see this region's nucleotide sequence