Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20570 and SM_b20571 are separated by 96 nucleotides SM_b20571 and SM_b21691 are separated by 16 nucleotides SM_b21691 and SM_b20573 are separated by 88 nucleotides SM_b20573 and SM_b20574 are separated by 180 nucleotides
SM_b20570: SM_b20570 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,582,692 to 1,583,684
_b20570
SM_b20571: SM_b20571 - aliphatic sulfonate ABC transporter permease, at 1,583,781 to 1,584,626
_b20571
SM_b21691: SM_b21691 - nitrilotriacetate monooxygenase subunit A, at 1,584,643 to 1,585,992
_b21691
SM_b20573: SM_b20573 - NADH-dependent FMN reductase, at 1,586,081 to 1,586,638
_b20573
SM_b20574: SM_b20574 - maltooligosyl trehalose synthase, at 1,586,819 to 1,589,446
_b20574
Position (kb)
1584
1585
1586 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1583.777 kb on - strand at 1583.905 kb on + strand, within SM_b20571 at 1583.905 kb on + strand, within SM_b20571 at 1584.073 kb on + strand, within SM_b20571 at 1584.312 kb on + strand, within SM_b20571 at 1584.313 kb on - strand, within SM_b20571 at 1584.314 kb on + strand, within SM_b20571 at 1584.315 kb on - strand, within SM_b20571 at 1584.334 kb on - strand, within SM_b20571 at 1584.557 kb on - strand at 1584.645 kb on - strand at 1584.645 kb on - strand at 1584.767 kb on - strand at 1584.905 kb on + strand, within SM_b21691 at 1584.906 kb on - strand, within SM_b21691 at 1584.906 kb on - strand, within SM_b21691 at 1584.906 kb on - strand, within SM_b21691 at 1584.935 kb on + strand, within SM_b21691 at 1584.935 kb on + strand, within SM_b21691 at 1584.936 kb on - strand, within SM_b21691 at 1584.936 kb on - strand, within SM_b21691 at 1585.133 kb on + strand, within SM_b21691 at 1585.247 kb on + strand, within SM_b21691 at 1585.248 kb on - strand, within SM_b21691 at 1585.312 kb on + strand, within SM_b21691 at 1585.544 kb on + strand, within SM_b21691 at 1585.679 kb on + strand, within SM_b21691 at 1585.691 kb on + strand, within SM_b21691 at 1585.691 kb on + strand, within SM_b21691 at 1585.691 kb on + strand, within SM_b21691 at 1585.941 kb on + strand at 1585.941 kb on + strand at 1586.209 kb on - strand, within SM_b20573 at 1586.379 kb on + strand, within SM_b20573 at 1586.379 kb on + strand, within SM_b20573 at 1586.379 kb on + strand, within SM_b20573 at 1586.379 kb on + strand, within SM_b20573 at 1586.379 kb on + strand, within SM_b20573 at 1586.380 kb on - strand, within SM_b20573 at 1586.380 kb on - strand, within SM_b20573 at 1586.380 kb on - strand, within SM_b20573 at 1586.380 kb on - strand, within SM_b20573 at 1586.380 kb on - strand, within SM_b20573 at 1586.445 kb on + strand, within SM_b20573 at 1586.446 kb on - strand, within SM_b20573 at 1586.446 kb on - strand, within SM_b20573 at 1586.446 kb on - strand, within SM_b20573 at 1586.446 kb on - strand, within SM_b20573 at 1586.602 kb on + strand at 1586.602 kb on + strand at 1586.602 kb on + strand at 1586.603 kb on - strand at 1586.603 kb on - strand at 1586.615 kb on - strand at 1586.645 kb on - strand at 1586.704 kb on + strand at 1586.721 kb on - strand at 1586.721 kb on - strand at 1586.840 kb on + strand at 1586.841 kb on - strand at 1586.927 kb on + strand at 1586.928 kb on - strand at 1586.973 kb on - strand at 1586.987 kb on + strand at 1586.987 kb on + strand at 1586.988 kb on - strand at 1586.989 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,583,777 - +1.3 1,583,905 + SM_b20571 0.15 -0.1 1,583,905 + SM_b20571 0.15 +1.2 1,584,073 + SM_b20571 0.35 +1.5 1,584,312 + SM_b20571 0.63 +0.5 1,584,313 - SM_b20571 0.63 +2.3 1,584,314 + SM_b20571 0.63 -0.7 1,584,315 - SM_b20571 0.63 -3.4 1,584,334 - SM_b20571 0.65 +0.3 1,584,557 - -0.2 1,584,645 - +0.2 1,584,645 - -0.3 1,584,767 - +0.3 1,584,905 + SM_b21691 0.19 +0.1 1,584,906 - SM_b21691 0.19 -0.1 1,584,906 - SM_b21691 0.19 +0.3 1,584,906 - SM_b21691 0.19 +0.1 1,584,935 + SM_b21691 0.22 +0.5 1,584,935 + SM_b21691 0.22 -0.5 1,584,936 - SM_b21691 0.22 +0.4 1,584,936 - SM_b21691 0.22 -0.1 1,585,133 + SM_b21691 0.36 -3.1 1,585,247 + SM_b21691 0.45 -0.6 1,585,248 - SM_b21691 0.45 -1.3 1,585,312 + SM_b21691 0.50 -1.5 1,585,544 + SM_b21691 0.67 +0.2 1,585,679 + SM_b21691 0.77 +0.5 1,585,691 + SM_b21691 0.78 -0.0 1,585,691 + SM_b21691 0.78 -0.2 1,585,691 + SM_b21691 0.78 -1.4 1,585,941 + +1.0 1,585,941 + -2.4 1,586,209 - SM_b20573 0.23 +0.1 1,586,379 + SM_b20573 0.53 -2.4 1,586,379 + SM_b20573 0.53 -4.2 1,586,379 + SM_b20573 0.53 +0.3 1,586,379 + SM_b20573 0.53 +0.5 1,586,379 + SM_b20573 0.53 +0.5 1,586,380 - SM_b20573 0.54 -0.5 1,586,380 - SM_b20573 0.54 -0.7 1,586,380 - SM_b20573 0.54 -0.3 1,586,380 - SM_b20573 0.54 +0.8 1,586,380 - SM_b20573 0.54 -0.0 1,586,445 + SM_b20573 0.65 +1.0 1,586,446 - SM_b20573 0.65 +0.8 1,586,446 - SM_b20573 0.65 +0.5 1,586,446 - SM_b20573 0.65 -0.4 1,586,446 - SM_b20573 0.65 -0.3 1,586,602 + -0.4 1,586,602 + +0.1 1,586,602 + -1.1 1,586,603 - -0.6 1,586,603 - +0.4 1,586,615 - +0.5 1,586,645 - -0.6 1,586,704 + -1.5 1,586,721 - +0.0 1,586,721 - +0.6 1,586,840 + -0.5 1,586,841 - -0.2 1,586,927 + +0.1 1,586,928 - -0.0 1,586,973 - +0.3 1,586,987 + +1.0 1,586,987 + -2.9 1,586,988 - -0.5 1,586,989 + -1.1
Or see this region's nucleotide sequence