Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21652

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21652 and SM_b21653 are separated by 93 nucleotidesSM_b21653 and SM_b21654 overlap by 4 nucleotides SM_b21652: SM_b21652 - ABC transporter for Lactose, periplasmic substrate-binding component (from data), at 1 to 1,275 _b21652 SM_b21653: SM_b21653 - ABC transporter for Lactose, permease component 1 (from data), at 1,369 to 2,265 _b21653 SM_b21654: SM_b21654 - ABC transporter for Lactose, permease component 2 (from data), at 2,262 to 3,080 _b21654 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 0.292 kb on + strand, within SM_b21652at 0.293 kb on - strand, within SM_b21652at 0.377 kb on - strand, within SM_b21652at 0.412 kb on + strand, within SM_b21652at 0.413 kb on - strand, within SM_b21652at 0.413 kb on - strand, within SM_b21652at 0.448 kb on + strand, within SM_b21652at 0.449 kb on - strand, within SM_b21652at 0.720 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.724 kb on + strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strandat 0.725 kb on - strand, within SM_b21652at 0.725 kb on - strand, within SM_b21652at 0.854 kb on + strand, within SM_b21652at 0.854 kb on + strand, within SM_b21652at 0.855 kb on - strand, within SM_b21652at 0.922 kb on + strand, within SM_b21652at 0.923 kb on - strand, within SM_b21652at 0.923 kb on - strand, within SM_b21652at 0.926 kb on + strand, within SM_b21652at 0.927 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.067 kb on - strand, within SM_b21652at 1.402 kb on + strandat 1.402 kb on + strandat 1.403 kb on - strandat 1.739 kb on - strand, within SM_b21653at 1.892 kb on - strand, within SM_b21653at 1.906 kb on + strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 1.907 kb on - strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.077 kb on + strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.078 kb on - strand, within SM_b21653at 2.079 kb on + strand, within SM_b21653at 2.080 kb on - strand, within SM_b21653at 2.134 kb on + strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.135 kb on - strand, within SM_b21653at 2.140 kb on + strand, within SM_b21653at 2.141 kb on - strand, within SM_b21653at 2.195 kb on - strandat 2.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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292 + SM_b21652 0.23 -0.3
293 - SM_b21652 0.23 -0.3
377 - SM_b21652 0.29 +0.5
412 + SM_b21652 0.32 +0.1
413 - SM_b21652 0.32 -0.4
413 - SM_b21652 0.32 -0.3
448 + SM_b21652 0.35 +1.0
449 - SM_b21652 0.35 -2.1
720 + SM_b21652 0.56 +0.2
724 + SM_b21652 0.57 +1.0
724 + SM_b21652 0.57 -0.6
724 + SM_b21652 0.57 +0.7
724 + SM_b21652 0.57 -0.8
725 - SM_b21652 0.57 +2.8
725 - SM_b21652 0.57 +0.8
725 - SM_b21652 0.57 -2.9
725 - +1.3
725 - SM_b21652 0.57 -0.2
725 - SM_b21652 0.57 -0.3
854 + SM_b21652 0.67 +0.8
854 + SM_b21652 0.67 -0.8
855 - SM_b21652 0.67 +0.8
922 + SM_b21652 0.72 -0.9
923 - SM_b21652 0.72 -0.1
923 - SM_b21652 0.72 -2.7
926 + SM_b21652 0.73 -1.6
927 - SM_b21652 0.73 -2.0
1,067 - SM_b21652 0.84 -0.4
1,067 - SM_b21652 0.84 -2.3
1,067 - SM_b21652 0.84 -1.8
1,402 + +0.3
1,402 + -0.1
1,403 - -1.2
1,739 - SM_b21653 0.41 -0.1
1,892 - SM_b21653 0.58 -0.7
1,906 + SM_b21653 0.60 +3.3
1,907 - SM_b21653 0.60 -0.4
1,907 - SM_b21653 0.60 +0.0
2,077 + SM_b21653 0.79 -1.4
2,077 + SM_b21653 0.79 +0.1
2,077 + SM_b21653 0.79 +0.6
2,078 - SM_b21653 0.79 +1.8
2,078 - SM_b21653 0.79 -0.7
2,079 + SM_b21653 0.79 -0.6
2,080 - SM_b21653 0.79 -0.2
2,134 + SM_b21653 0.85 -0.4
2,135 - SM_b21653 0.85 -2.1
2,135 - SM_b21653 0.85 -0.3
2,140 + SM_b21653 0.86 +1.5
2,141 - SM_b21653 0.86 +0.1
2,195 - +0.0
2,195 - -2.3

Or see this region's nucleotide sequence