Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21592 and SM_b21593 overlap by 4 nucleotides SM_b21593 and SM_b21594 overlap by 4 nucleotides SM_b21594 and SM_b21595 are separated by 169 nucleotides
SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553
_b21592
SM_b21593: SM_b21593 - sugar uptake ABC transporter permease, at 1,133,550 to 1,134,377
_b21593
SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276
_b21594
SM_b21595: SM_b21595 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,135,446 to 1,136,678
_b21595
Position (kb)
1134
1135
1136 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1133.473 kb on + strand at 1133.504 kb on + strand at 1133.514 kb on - strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.629 kb on + strand at 1133.630 kb on - strand at 1133.630 kb on - strand at 1133.642 kb on - strand, within SM_b21593 at 1133.651 kb on + strand, within SM_b21593 at 1133.652 kb on - strand, within SM_b21593 at 1133.670 kb on - strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.103 kb on + strand, within SM_b21593 at 1134.104 kb on - strand, within SM_b21593 at 1134.175 kb on + strand, within SM_b21593 at 1134.211 kb on + strand, within SM_b21593 at 1134.212 kb on - strand, within SM_b21593 at 1134.287 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.292 kb on + strand, within SM_b21593 at 1134.301 kb on + strand at 1134.302 kb on - strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.316 kb on + strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.317 kb on - strand at 1134.408 kb on + strand at 1134.408 kb on + strand at 1134.409 kb on - strand at 1134.477 kb on + strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.478 kb on - strand, within SM_b21594 at 1134.508 kb on - strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.526 kb on + strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.527 kb on - strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.690 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.760 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1134.998 kb on + strand, within SM_b21594 at 1135.088 kb on - strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.170 kb on + strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.171 kb on - strand, within SM_b21594 at 1135.252 kb on + strand at 1135.262 kb on + strand at 1135.263 kb on - strand at 1135.416 kb on + strand at 1135.464 kb on + strand at 1135.542 kb on - strand at 1135.871 kb on + strand, within SM_b21595 at 1135.871 kb on + strand, within SM_b21595 at 1135.928 kb on + strand, within SM_b21595 at 1135.928 kb on + strand, within SM_b21595 at 1135.928 kb on + strand, within SM_b21595 at 1136.126 kb on - strand, within SM_b21595 at 1136.236 kb on + strand, within SM_b21595 at 1136.236 kb on + strand, within SM_b21595 at 1136.237 kb on - strand, within SM_b21595 at 1136.240 kb on - strand, within SM_b21595 at 1136.240 kb on - strand, within SM_b21595 at 1136.240 kb on - strand, within SM_b21595
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,133,473 + +0.1 1,133,504 + -2.5 1,133,514 - +0.9 1,133,629 + +0.6 1,133,629 + +0.2 1,133,629 + +0.9 1,133,630 - -1.5 1,133,630 - -0.2 1,133,642 - SM_b21593 0.11 +3.0 1,133,651 + SM_b21593 0.12 +0.4 1,133,652 - SM_b21593 0.12 -0.6 1,133,670 - SM_b21593 0.14 +0.2 1,134,103 + SM_b21593 0.67 +0.7 1,134,103 + SM_b21593 0.67 +0.4 1,134,104 - SM_b21593 0.67 -0.6 1,134,175 + SM_b21593 0.75 +0.0 1,134,211 + SM_b21593 0.80 +0.8 1,134,212 - SM_b21593 0.80 -0.6 1,134,287 + SM_b21593 0.89 +0.8 1,134,292 + SM_b21593 0.90 -2.0 1,134,292 + SM_b21593 0.90 -0.9 1,134,301 + +0.8 1,134,302 - +0.0 1,134,316 + -1.6 1,134,316 + -0.6 1,134,316 + -0.7 1,134,316 + -1.4 1,134,317 - -0.4 1,134,317 - -0.7 1,134,317 - +0.5 1,134,408 + +0.5 1,134,408 + +1.8 1,134,409 - +0.2 1,134,477 + SM_b21594 0.11 -0.4 1,134,478 - SM_b21594 0.12 +0.1 1,134,478 - SM_b21594 0.12 +0.6 1,134,508 - SM_b21594 0.15 -0.9 1,134,526 + SM_b21594 0.17 -0.4 1,134,526 + SM_b21594 0.17 +0.2 1,134,527 - SM_b21594 0.17 +1.8 1,134,527 - SM_b21594 0.17 +0.2 1,134,527 - SM_b21594 0.17 +0.2 1,134,690 + SM_b21594 0.35 +0.3 1,134,690 + SM_b21594 0.35 +3.2 1,134,760 + SM_b21594 0.43 +2.4 1,134,760 + SM_b21594 0.43 -0.8 1,134,760 + SM_b21594 0.43 +0.7 1,134,998 + SM_b21594 0.69 +0.3 1,134,998 + SM_b21594 0.69 +0.0 1,135,088 - SM_b21594 0.79 -0.4 1,135,170 + SM_b21594 0.88 -0.6 1,135,170 + SM_b21594 0.88 -0.3 1,135,171 - SM_b21594 0.88 +1.0 1,135,171 - SM_b21594 0.88 +0.0 1,135,252 + +0.3 1,135,262 + +0.3 1,135,263 - -0.2 1,135,416 + -0.7 1,135,464 + +0.1 1,135,542 - -0.5 1,135,871 + SM_b21595 0.34 +0.1 1,135,871 + SM_b21595 0.34 -0.2 1,135,928 + SM_b21595 0.39 -2.9 1,135,928 + SM_b21595 0.39 +0.5 1,135,928 + SM_b21595 0.39 -0.2 1,136,126 - SM_b21595 0.55 +0.4 1,136,236 + SM_b21595 0.64 +0.3 1,136,236 + SM_b21595 0.64 +0.6 1,136,237 - SM_b21595 0.64 -0.3 1,136,240 - SM_b21595 0.64 -0.1 1,136,240 - SM_b21595 0.64 +1.3 1,136,240 - SM_b21595 0.64 +0.1
Or see this region's nucleotide sequence