Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21588 and SM_b21589 overlap by 4 nucleotides SM_b21589 and SM_b21590 overlap by 4 nucleotides SM_b21590 and SM_b21591 are separated by 17 nucleotides
SM_b21588: SM_b21588 - sugar uptake ABC transporter ATP-binding protein, at 1,128,000 to 1,129,517
_b21588
SM_b21589: SM_b21589 - sugar uptake ABC transporter permease, at 1,129,514 to 1,130,539
_b21589
SM_b21590: SM_b21590 - inner membrane ABC transporter permease YjfF, at 1,130,536 to 1,131,504
_b21590
SM_b21591: SM_b21591 - GntR family transcriptional regulator, at 1,131,522 to 1,132,256
_b21591
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1128.560 kb on - strand, within SM_b21588 at 1128.621 kb on + strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.147 kb on - strand, within SM_b21588 at 1129.535 kb on + strand at 1129.535 kb on + strand at 1129.536 kb on - strand at 1129.536 kb on - strand at 1129.643 kb on + strand, within SM_b21589 at 1129.644 kb on - strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.651 kb on + strand, within SM_b21589 at 1129.965 kb on + strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1129.966 kb on - strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.174 kb on + strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.175 kb on - strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.259 kb on + strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589 at 1130.260 kb on - strand, within SM_b21589 at 1130.611 kb on + strand at 1130.866 kb on + strand, within SM_b21590 at 1130.866 kb on + strand, within SM_b21590 at 1130.866 kb on + strand, within SM_b21590 at 1130.867 kb on - strand, within SM_b21590 at 1130.992 kb on + strand, within SM_b21590 at 1131.099 kb on + strand, within SM_b21590 at 1131.099 kb on + strand, within SM_b21590 at 1131.100 kb on - strand, within SM_b21590 at 1131.100 kb on - strand, within SM_b21590 at 1131.100 kb on - strand, within SM_b21590 at 1131.100 kb on - strand, within SM_b21590 at 1131.100 kb on - strand, within SM_b21590 at 1131.103 kb on + strand, within SM_b21590 at 1131.104 kb on - strand, within SM_b21590 at 1131.104 kb on - strand, within SM_b21590 at 1131.104 kb on - strand, within SM_b21590 at 1131.176 kb on - strand, within SM_b21590 at 1131.176 kb on - strand, within SM_b21590 at 1131.227 kb on - strand, within SM_b21590 at 1131.227 kb on - strand, within SM_b21590 at 1131.229 kb on - strand, within SM_b21590 at 1131.229 kb on - strand, within SM_b21590 at 1131.376 kb on + strand, within SM_b21590 at 1131.376 kb on + strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590 at 1131.377 kb on - strand, within SM_b21590
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,128,560 - SM_b21588 0.37 -0.5 1,128,621 + SM_b21588 0.41 -0.3 1,129,147 - SM_b21588 0.76 -1.0 1,129,147 - SM_b21588 0.76 +1.1 1,129,535 + -0.5 1,129,535 + +0.2 1,129,536 - -1.0 1,129,536 - -0.3 1,129,643 + SM_b21589 0.13 +0.3 1,129,644 - SM_b21589 0.13 -0.5 1,129,651 + SM_b21589 0.13 -0.5 1,129,651 + SM_b21589 0.13 -0.3 1,129,965 + SM_b21589 0.44 -1.1 1,129,966 - SM_b21589 0.44 +0.9 1,129,966 - SM_b21589 0.44 -0.5 1,129,966 - SM_b21589 0.44 -0.5 1,130,174 + SM_b21589 0.64 -0.2 1,130,174 + SM_b21589 0.64 -0.5 1,130,175 - SM_b21589 0.64 -1.1 1,130,175 - SM_b21589 0.64 -1.1 1,130,259 + SM_b21589 0.73 -2.9 1,130,259 + SM_b21589 0.73 -1.4 1,130,260 - SM_b21589 0.73 -0.8 1,130,260 - SM_b21589 0.73 -1.4 1,130,611 + -0.3 1,130,866 + SM_b21590 0.34 +1.0 1,130,866 + SM_b21590 0.34 +0.7 1,130,866 + SM_b21590 0.34 +0.8 1,130,867 - SM_b21590 0.34 +4.4 1,130,992 + SM_b21590 0.47 -1.0 1,131,099 + SM_b21590 0.58 +1.2 1,131,099 + SM_b21590 0.58 +0.4 1,131,100 - SM_b21590 0.58 +0.2 1,131,100 - SM_b21590 0.58 -0.6 1,131,100 - SM_b21590 0.58 -0.3 1,131,100 - SM_b21590 0.58 -1.6 1,131,100 - SM_b21590 0.58 +1.1 1,131,103 + SM_b21590 0.59 -0.0 1,131,104 - SM_b21590 0.59 +0.0 1,131,104 - SM_b21590 0.59 -0.3 1,131,104 - SM_b21590 0.59 +0.2 1,131,176 - SM_b21590 0.66 +1.1 1,131,176 - SM_b21590 0.66 +0.4 1,131,227 - SM_b21590 0.71 -2.8 1,131,227 - SM_b21590 0.71 +0.2 1,131,229 - SM_b21590 0.72 -0.6 1,131,229 - SM_b21590 0.72 -0.7 1,131,376 + SM_b21590 0.87 +0.7 1,131,376 + SM_b21590 0.87 -0.9 1,131,377 - SM_b21590 0.87 +0.8 1,131,377 - SM_b21590 0.87 -0.1 1,131,377 - SM_b21590 0.87 +0.1 1,131,377 - SM_b21590 0.87 +1.1 1,131,377 - SM_b21590 0.87 -0.4 1,131,377 - SM_b21590 0.87 -0.8 1,131,377 - SM_b21590 0.87 -0.3 1,131,377 - SM_b21590 0.87 -0.3
Or see this region's nucleotide sequence