Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21543 and SM_b21544 are separated by 124 nucleotides SM_b21544 and SM_b21545 are separated by 88 nucleotides SM_b21545 and SM_b21546 overlap by 13 nucleotides
SM_b21543: SM_b21543 - outer membrane secretion protein, at 1,074,957 to 1,078,295
_b21543
SM_b21544: SM_b21544 - hypothetical protein, at 1,078,420 to 1,078,818
_b21544
SM_b21545: SM_b21545 - two-component response regulator protein, at 1,078,907 to 1,079,689
_b21545
SM_b21546: SM_b21546 - two-component sensor histidine kinase, at 1,079,677 to 1,080,828
_b21546
Position (kb)
1078
1079 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1077.518 kb on + strand, within SM_b21543 at 1077.558 kb on + strand, within SM_b21543 at 1077.559 kb on - strand, within SM_b21543 at 1077.559 kb on - strand, within SM_b21543 at 1077.559 kb on - strand, within SM_b21543 at 1077.582 kb on - strand, within SM_b21543 at 1077.590 kb on + strand, within SM_b21543 at 1077.591 kb on - strand, within SM_b21543 at 1077.707 kb on + strand, within SM_b21543 at 1077.733 kb on + strand, within SM_b21543 at 1077.734 kb on - strand, within SM_b21543 at 1077.739 kb on + strand, within SM_b21543 at 1077.740 kb on - strand, within SM_b21543 at 1077.759 kb on + strand, within SM_b21543 at 1077.759 kb on + strand, within SM_b21543 at 1077.759 kb on + strand, within SM_b21543 at 1077.760 kb on - strand, within SM_b21543 at 1077.760 kb on - strand, within SM_b21543 at 1077.760 kb on - strand, within SM_b21543 at 1077.760 kb on - strand, within SM_b21543 at 1077.762 kb on + strand, within SM_b21543 at 1077.763 kb on - strand, within SM_b21543 at 1077.763 kb on - strand, within SM_b21543 at 1077.763 kb on - strand, within SM_b21543 at 1077.766 kb on + strand, within SM_b21543 at 1077.766 kb on + strand, within SM_b21543 at 1077.767 kb on - strand, within SM_b21543 at 1077.767 kb on - strand, within SM_b21543 at 1077.767 kb on - strand, within SM_b21543 at 1077.767 kb on - strand, within SM_b21543 at 1077.837 kb on + strand, within SM_b21543 at 1077.837 kb on + strand, within SM_b21543 at 1077.837 kb on + strand, within SM_b21543 at 1077.837 kb on + strand, within SM_b21543 at 1077.838 kb on - strand, within SM_b21543 at 1077.838 kb on - strand, within SM_b21543 at 1077.838 kb on - strand, within SM_b21543 at 1077.851 kb on - strand, within SM_b21543 at 1077.983 kb on + strand at 1077.983 kb on + strand at 1077.984 kb on - strand at 1077.984 kb on - strand at 1078.173 kb on + strand at 1078.174 kb on - strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.200 kb on + strand at 1078.240 kb on - strand at 1078.286 kb on + strand at 1078.290 kb on - strand at 1078.290 kb on - strand at 1078.294 kb on - strand at 1078.294 kb on - strand at 1078.294 kb on - strand at 1078.356 kb on + strand at 1078.370 kb on + strand at 1078.384 kb on + strand at 1078.448 kb on + strand at 1078.449 kb on - strand at 1078.573 kb on + strand, within SM_b21544 at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.789 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.813 kb on + strand at 1078.814 kb on - strand at 1078.814 kb on - strand at 1078.830 kb on + strand at 1078.830 kb on + strand at 1078.831 kb on - strand at 1078.847 kb on + strand at 1078.847 kb on + strand at 1078.996 kb on + strand, within SM_b21545 at 1078.996 kb on + strand, within SM_b21545 at 1079.069 kb on + strand, within SM_b21545 at 1079.072 kb on - strand, within SM_b21545 at 1079.144 kb on + strand, within SM_b21545 at 1079.439 kb on + strand, within SM_b21545 at 1079.439 kb on + strand at 1079.440 kb on - strand, within SM_b21545 at 1079.440 kb on - strand, within SM_b21545 at 1079.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,077,518 + SM_b21543 0.77 -0.3 1,077,558 + SM_b21543 0.78 -0.3 1,077,559 - SM_b21543 0.78 +0.3 1,077,559 - SM_b21543 0.78 -2.0 1,077,559 - SM_b21543 0.78 +1.2 1,077,582 - SM_b21543 0.79 +0.9 1,077,590 + SM_b21543 0.79 +0.3 1,077,591 - SM_b21543 0.79 -0.5 1,077,707 + SM_b21543 0.82 -1.2 1,077,733 + SM_b21543 0.83 -0.8 1,077,734 - SM_b21543 0.83 -0.4 1,077,739 + SM_b21543 0.83 +1.1 1,077,740 - SM_b21543 0.83 +1.5 1,077,759 + SM_b21543 0.84 -0.0 1,077,759 + SM_b21543 0.84 +0.3 1,077,759 + SM_b21543 0.84 +0.3 1,077,760 - SM_b21543 0.84 -1.8 1,077,760 - SM_b21543 0.84 +0.5 1,077,760 - SM_b21543 0.84 +0.2 1,077,760 - SM_b21543 0.84 -1.2 1,077,762 + SM_b21543 0.84 +0.6 1,077,763 - SM_b21543 0.84 +1.5 1,077,763 - SM_b21543 0.84 +0.1 1,077,763 - SM_b21543 0.84 +1.0 1,077,766 + SM_b21543 0.84 -0.4 1,077,766 + SM_b21543 0.84 -1.3 1,077,767 - SM_b21543 0.84 +1.2 1,077,767 - SM_b21543 0.84 -1.6 1,077,767 - SM_b21543 0.84 -0.8 1,077,767 - SM_b21543 0.84 -0.9 1,077,837 + SM_b21543 0.86 +0.0 1,077,837 + SM_b21543 0.86 +0.6 1,077,837 + SM_b21543 0.86 +0.8 1,077,837 + SM_b21543 0.86 -2.7 1,077,838 - SM_b21543 0.86 -0.0 1,077,838 - SM_b21543 0.86 -0.8 1,077,838 - SM_b21543 0.86 -0.6 1,077,851 - SM_b21543 0.87 +0.4 1,077,983 + -0.3 1,077,983 + -1.2 1,077,984 - -0.5 1,077,984 - +0.4 1,078,173 + -0.8 1,078,174 - -2.6 1,078,200 + -0.1 1,078,200 + -1.0 1,078,200 + -0.3 1,078,200 + -0.7 1,078,240 - +0.4 1,078,286 + +0.1 1,078,290 - -1.4 1,078,290 - -0.5 1,078,294 - -0.4 1,078,294 - -0.8 1,078,294 - +0.1 1,078,356 + +0.0 1,078,370 + +0.9 1,078,384 + +1.4 1,078,448 + -0.2 1,078,449 - +0.3 1,078,573 + SM_b21544 0.38 -0.5 1,078,789 + +0.2 1,078,789 + +0.4 1,078,789 + +0.2 1,078,789 + +0.3 1,078,813 + +0.3 1,078,813 + +0.5 1,078,813 + -0.2 1,078,813 + +0.5 1,078,814 - +0.3 1,078,814 - +0.0 1,078,830 + -2.0 1,078,830 + -0.6 1,078,831 - -3.0 1,078,847 + +0.8 1,078,847 + -0.5 1,078,996 + SM_b21545 0.11 -1.3 1,078,996 + SM_b21545 0.11 -0.6 1,079,069 + SM_b21545 0.21 +0.6 1,079,072 - SM_b21545 0.21 -1.1 1,079,144 + SM_b21545 0.30 +0.5 1,079,439 + SM_b21545 0.68 -1.4 1,079,439 + +1.6 1,079,440 - SM_b21545 0.68 +1.2 1,079,440 - SM_b21545 0.68 -1.0 1,079,765 + -0.3
Or see this region's nucleotide sequence