Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21517 and SM_b21518 are separated by 21 nucleotides SM_b21518 and SM_b21519 are separated by 215 nucleotides
SM_b21517: SM_b21517 - hypothetical protein, at 1,441,331 to 1,442,146
_b21517
SM_b21518: SM_b21518 - hypothetical protein, at 1,442,168 to 1,442,923
_b21518
SM_b21519: SM_b21519 - two-component sensor histidine kinase, at 1,443,139 to 1,444,611
_b21519
Position (kb)
1442
1443 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1441.205 kb on + strand at 1441.209 kb on - strand at 1441.316 kb on + strand at 1441.316 kb on + strand at 1441.317 kb on - strand at 1441.317 kb on - strand at 1441.317 kb on - strand at 1441.332 kb on + strand at 1441.332 kb on + strand at 1441.333 kb on - strand at 1441.333 kb on - strand at 1441.333 kb on - strand at 1441.401 kb on + strand at 1441.401 kb on + strand at 1441.402 kb on - strand at 1441.485 kb on + strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand at 1441.486 kb on - strand, within SM_b21517 at 1441.486 kb on - strand, within SM_b21517 at 1441.686 kb on + strand, within SM_b21517 at 1441.687 kb on - strand, within SM_b21517 at 1441.809 kb on + strand, within SM_b21517 at 1441.809 kb on + strand at 1441.917 kb on + strand, within SM_b21517 at 1442.000 kb on + strand, within SM_b21517 at 1442.001 kb on - strand, within SM_b21517 at 1442.025 kb on + strand, within SM_b21517 at 1442.025 kb on + strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.026 kb on - strand, within SM_b21517 at 1442.079 kb on - strand at 1442.204 kb on - strand at 1442.224 kb on + strand at 1442.231 kb on + strand at 1442.232 kb on - strand at 1442.232 kb on - strand at 1442.403 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.466 kb on + strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.467 kb on - strand, within SM_b21518 at 1442.561 kb on + strand, within SM_b21518 at 1442.562 kb on - strand, within SM_b21518 at 1442.562 kb on - strand, within SM_b21518 at 1442.707 kb on + strand, within SM_b21518 at 1442.708 kb on - strand, within SM_b21518 at 1442.835 kb on + strand, within SM_b21518 at 1442.890 kb on + strand at 1442.890 kb on + strand at 1442.891 kb on - strand at 1442.891 kb on - strand at 1443.052 kb on + strand at 1443.052 kb on + strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.053 kb on - strand at 1443.093 kb on - strand at 1443.093 kb on - strand at 1443.106 kb on - strand at 1443.144 kb on - strand at 1443.335 kb on + strand, within SM_b21519 at 1443.336 kb on - strand at 1443.379 kb on + strand, within SM_b21519 at 1443.379 kb on + strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.380 kb on - strand, within SM_b21519 at 1443.571 kb on + strand, within SM_b21519 at 1443.572 kb on - strand, within SM_b21519 at 1443.691 kb on + strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519 at 1443.692 kb on - strand, within SM_b21519
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,441,205 + +0.5 1,441,209 - -0.9 1,441,316 + -0.7 1,441,316 + -0.9 1,441,317 - -0.0 1,441,317 - +0.2 1,441,317 - -3.8 1,441,332 + -0.1 1,441,332 + +0.4 1,441,333 - -1.6 1,441,333 - -0.4 1,441,333 - -0.6 1,441,401 + -1.1 1,441,401 + +0.0 1,441,402 - -0.5 1,441,485 + SM_b21517 0.19 -0.4 1,441,486 - SM_b21517 0.19 -1.1 1,441,486 - SM_b21517 0.19 -2.1 1,441,486 - SM_b21517 0.19 +0.7 1,441,486 - +1.2 1,441,486 - SM_b21517 0.19 +0.3 1,441,486 - SM_b21517 0.19 -1.2 1,441,686 + SM_b21517 0.44 -3.7 1,441,687 - SM_b21517 0.44 +1.5 1,441,809 + SM_b21517 0.59 +1.6 1,441,809 + +1.2 1,441,917 + SM_b21517 0.72 +0.1 1,442,000 + SM_b21517 0.82 -1.5 1,442,001 - SM_b21517 0.82 -0.0 1,442,025 + SM_b21517 0.85 -0.8 1,442,025 + SM_b21517 0.85 +0.1 1,442,026 - SM_b21517 0.85 +2.1 1,442,026 - SM_b21517 0.85 -1.3 1,442,026 - SM_b21517 0.85 -0.9 1,442,026 - SM_b21517 0.85 +0.4 1,442,079 - +0.9 1,442,204 - +0.4 1,442,224 + -2.2 1,442,231 + -0.8 1,442,232 - +1.3 1,442,232 - -0.1 1,442,403 + SM_b21518 0.31 +0.3 1,442,466 + SM_b21518 0.39 +0.2 1,442,466 + SM_b21518 0.39 -3.5 1,442,466 + SM_b21518 0.39 +0.2 1,442,467 - SM_b21518 0.40 +0.1 1,442,467 - SM_b21518 0.40 +1.8 1,442,467 - SM_b21518 0.40 -0.5 1,442,467 - SM_b21518 0.40 +2.0 1,442,561 + SM_b21518 0.52 +0.1 1,442,562 - SM_b21518 0.52 +1.4 1,442,562 - SM_b21518 0.52 +0.5 1,442,707 + SM_b21518 0.71 +0.9 1,442,708 - SM_b21518 0.71 +0.6 1,442,835 + SM_b21518 0.88 +0.3 1,442,890 + +0.2 1,442,890 + +0.3 1,442,891 - -0.8 1,442,891 - -1.9 1,443,052 + +0.1 1,443,052 + -0.7 1,443,053 - +0.9 1,443,053 - -0.5 1,443,053 - +0.5 1,443,053 - -2.6 1,443,053 - +0.8 1,443,093 - +0.3 1,443,093 - -1.1 1,443,106 - -2.3 1,443,144 - +0.1 1,443,335 + SM_b21519 0.13 -0.6 1,443,336 - -0.3 1,443,379 + SM_b21519 0.16 -3.0 1,443,379 + SM_b21519 0.16 -0.0 1,443,380 - SM_b21519 0.16 -1.6 1,443,380 - SM_b21519 0.16 +0.9 1,443,380 - SM_b21519 0.16 +0.7 1,443,571 + SM_b21519 0.29 +1.9 1,443,572 - SM_b21519 0.29 +1.1 1,443,691 + SM_b21519 0.37 +0.0 1,443,692 - SM_b21519 0.38 -0.6 1,443,692 - SM_b21519 0.38 +0.6 1,443,692 - SM_b21519 0.38 -0.2
Or see this region's nucleotide sequence