Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21403 and SM_b21404 are separated by 81 nucleotides SM_b21404 and SM_b21405 overlap by 13 nucleotides SM_b21405 and SM_b21406 are separated by 169 nucleotides
SM_b21403: SM_b21403 - hypothetical protein, at 1,335,358 to 1,335,813
_b21403
SM_b21404: SM_b21404 - hypothetical protein, at 1,335,895 to 1,336,335
_b21404
SM_b21405: SM_b21405 - isochorismatase, at 1,336,323 to 1,336,976
_b21405
SM_b21406: SM_b21406 - hypothetical protein, at 1,337,146 to 1,338,030
_b21406
Position (kb)
1335
1336
1337 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1334.964 kb on + strand at 1335.156 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.181 kb on - strand at 1335.181 kb on - strand at 1335.308 kb on + strand at 1335.308 kb on + strand at 1335.309 kb on - strand at 1335.317 kb on + strand at 1335.427 kb on + strand, within SM_b21403 at 1335.427 kb on + strand, within SM_b21403 at 1335.427 kb on + strand, within SM_b21403 at 1335.491 kb on + strand, within SM_b21403 at 1335.492 kb on - strand, within SM_b21403 at 1335.492 kb on - strand, within SM_b21403 at 1335.503 kb on + strand, within SM_b21403 at 1335.504 kb on - strand, within SM_b21403 at 1335.504 kb on - strand, within SM_b21403 at 1335.539 kb on + strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.627 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.831 kb on + strand at 1335.831 kb on + strand at 1335.834 kb on - strand at 1335.854 kb on + strand at 1335.862 kb on + strand at 1335.866 kb on - strand at 1335.873 kb on + strand at 1335.874 kb on - strand at 1335.874 kb on - strand at 1335.874 kb on - strand at 1335.878 kb on + strand at 1336.035 kb on + strand, within SM_b21404 at 1336.035 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.144 kb on - strand, within SM_b21404 at 1336.167 kb on - strand, within SM_b21404 at 1336.176 kb on + strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.205 kb on + strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.367 kb on + strand at 1336.431 kb on + strand, within SM_b21405 at 1336.432 kb on - strand, within SM_b21405 at 1336.708 kb on + strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405 at 1337.065 kb on - strand at 1337.179 kb on + strand at 1337.218 kb on + strand at 1337.219 kb on - strand at 1337.219 kb on - strand at 1337.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,334,964 + +0.4 1,335,156 + +1.0 1,335,180 + -3.1 1,335,180 + +0.6 1,335,180 + +0.0 1,335,180 + +1.4 1,335,180 + +0.1 1,335,181 - -3.0 1,335,181 - +0.6 1,335,308 + -0.8 1,335,308 + -2.3 1,335,309 - -1.2 1,335,317 + -0.0 1,335,427 + SM_b21403 0.15 +2.3 1,335,427 + SM_b21403 0.15 +1.1 1,335,427 + SM_b21403 0.15 +0.7 1,335,491 + SM_b21403 0.29 -1.5 1,335,492 - SM_b21403 0.29 -1.9 1,335,492 - SM_b21403 0.29 -3.1 1,335,503 + SM_b21403 0.32 -1.3 1,335,504 - SM_b21403 0.32 -1.3 1,335,504 - SM_b21403 0.32 +0.9 1,335,539 + SM_b21403 0.40 -0.8 1,335,540 - SM_b21403 0.40 +1.5 1,335,540 - SM_b21403 0.40 -0.6 1,335,540 - SM_b21403 0.40 -0.3 1,335,627 + SM_b21403 0.59 +0.9 1,335,765 + SM_b21403 0.89 +0.0 1,335,765 + SM_b21403 0.89 +0.2 1,335,765 + SM_b21403 0.89 -1.6 1,335,766 - SM_b21403 0.89 +0.1 1,335,766 - SM_b21403 0.89 +1.1 1,335,766 - SM_b21403 0.89 +2.2 1,335,766 - SM_b21403 0.89 -0.1 1,335,766 - SM_b21403 0.89 -1.5 1,335,831 + +0.3 1,335,831 + -1.3 1,335,834 - -1.6 1,335,854 + +1.6 1,335,862 + -0.2 1,335,866 - -0.9 1,335,873 + -1.3 1,335,874 - -0.8 1,335,874 - -1.3 1,335,874 - +0.2 1,335,878 + -1.8 1,336,035 + SM_b21404 0.32 -1.1 1,336,035 + SM_b21404 0.32 -2.0 1,336,143 + SM_b21404 0.56 +0.9 1,336,143 + SM_b21404 0.56 +2.4 1,336,143 + SM_b21404 0.56 +1.8 1,336,144 - SM_b21404 0.56 +0.5 1,336,167 - SM_b21404 0.62 -0.2 1,336,176 + SM_b21404 0.64 -0.0 1,336,177 - SM_b21404 0.64 -2.5 1,336,177 - SM_b21404 0.64 +1.1 1,336,205 + SM_b21404 0.70 -1.2 1,336,206 - SM_b21404 0.71 -1.2 1,336,206 - SM_b21404 0.71 +0.9 1,336,206 - SM_b21404 0.71 +1.6 1,336,367 + +0.9 1,336,431 + SM_b21405 0.17 -1.7 1,336,432 - SM_b21405 0.17 +0.2 1,336,708 + SM_b21405 0.59 -0.1 1,336,709 - SM_b21405 0.59 +0.1 1,336,709 - SM_b21405 0.59 +0.5 1,337,065 - -3.1 1,337,179 + -0.2 1,337,218 + +0.8 1,337,219 - -0.7 1,337,219 - -0.3 1,337,221 - -1.6
Or see this region's nucleotide sequence