Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21376 and SM_b21377 are separated by 101 nucleotides SM_b21377 and SM_b21378 are separated by 157 nucleotides SM_b21378 and SM_b21379 are separated by 139 nucleotides
SM_b21376: SM_b21376 - sugar uptake ABC transporter ATP-binding protein, at 1,040,923 to 1,042,434
_b21376
SM_b21377: SM_b21377 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,042,536 to 1,043,426
_b21377
SM_b21378: SM_b21378 - hypothetical protein, at 1,043,584 to 1,044,042
_b21378
SM_b21379: SM_b21379 - hypothetical protein, at 1,044,182 to 1,044,556
_b21379
Position (kb)
1042
1043
1044 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1041.767 kb on + strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.768 kb on - strand, within SM_b21376 at 1041.835 kb on - strand, within SM_b21376 at 1042.320 kb on + strand at 1042.320 kb on + strand at 1042.321 kb on - strand at 1042.321 kb on - strand at 1042.414 kb on - strand at 1042.496 kb on + strand at 1042.537 kb on + strand at 1042.537 kb on + strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.538 kb on - strand at 1042.547 kb on + strand at 1042.549 kb on + strand at 1042.561 kb on - strand at 1042.964 kb on - strand, within SM_b21377 at 1043.142 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.308 kb on + strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377 at 1043.309 kb on - strand, within SM_b21377 at 1043.509 kb on + strand at 1043.509 kb on + strand at 1043.510 kb on - strand at 1043.510 kb on - strand at 1043.583 kb on - strand at 1043.786 kb on - strand, within SM_b21378 at 1043.786 kb on - strand, within SM_b21378 at 1043.919 kb on - strand, within SM_b21378 at 1043.955 kb on + strand, within SM_b21378 at 1044.144 kb on - strand at 1044.147 kb on + strand at 1044.147 kb on + strand at 1044.147 kb on + strand at 1044.147 kb on + strand at 1044.147 kb on + strand at 1044.147 kb on + strand at 1044.148 kb on - strand at 1044.335 kb on + strand, within SM_b21379 at 1044.335 kb on + strand, within SM_b21379 at 1044.335 kb on + strand, within SM_b21379 at 1044.336 kb on - strand, within SM_b21379 at 1044.336 kb on - strand, within SM_b21379 at 1044.392 kb on + strand, within SM_b21379 at 1044.392 kb on + strand, within SM_b21379 at 1044.392 kb on + strand, within SM_b21379 at 1044.393 kb on - strand at 1044.393 kb on - strand, within SM_b21379 at 1044.402 kb on - strand, within SM_b21379 at 1044.419 kb on + strand, within SM_b21379 at 1044.419 kb on + strand, within SM_b21379 at 1044.420 kb on - strand, within SM_b21379 at 1044.420 kb on - strand, within SM_b21379 at 1044.420 kb on - strand, within SM_b21379 at 1044.420 kb on - strand, within SM_b21379 at 1044.420 kb on - strand, within SM_b21379 at 1044.422 kb on + strand, within SM_b21379 at 1044.422 kb on + strand, within SM_b21379
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,041,767 + SM_b21376 0.56 +0.5 1,041,768 - SM_b21376 0.56 -1.2 1,041,768 - SM_b21376 0.56 +0.5 1,041,835 - SM_b21376 0.60 -3.7 1,042,320 + +0.3 1,042,320 + +2.1 1,042,321 - +0.2 1,042,321 - -0.1 1,042,414 - +0.5 1,042,496 + +0.0 1,042,537 + -0.1 1,042,537 + -3.0 1,042,538 - -0.3 1,042,538 - -1.4 1,042,538 - +0.9 1,042,547 + +1.9 1,042,549 + +0.3 1,042,561 - -0.5 1,042,964 - SM_b21377 0.48 +0.9 1,043,142 + SM_b21377 0.68 -0.3 1,043,308 + SM_b21377 0.87 +0.2 1,043,308 + SM_b21377 0.87 +1.7 1,043,308 + SM_b21377 0.87 -1.9 1,043,308 + SM_b21377 0.87 +0.6 1,043,309 - SM_b21377 0.87 +2.4 1,043,309 - SM_b21377 0.87 -0.2 1,043,509 + +0.7 1,043,509 + -1.4 1,043,510 - +0.3 1,043,510 - -0.1 1,043,583 - -0.4 1,043,786 - SM_b21378 0.44 +0.3 1,043,786 - SM_b21378 0.44 -0.3 1,043,919 - SM_b21378 0.73 -0.3 1,043,955 + SM_b21378 0.81 +0.7 1,044,144 - +0.1 1,044,147 + +0.7 1,044,147 + -1.1 1,044,147 + +0.3 1,044,147 + -0.4 1,044,147 + +0.0 1,044,147 + -0.3 1,044,148 - -0.3 1,044,335 + SM_b21379 0.41 +0.1 1,044,335 + SM_b21379 0.41 -1.7 1,044,335 + SM_b21379 0.41 +1.8 1,044,336 - SM_b21379 0.41 +0.3 1,044,336 - SM_b21379 0.41 -1.6 1,044,392 + SM_b21379 0.56 -0.2 1,044,392 + SM_b21379 0.56 +0.4 1,044,392 + SM_b21379 0.56 -1.2 1,044,393 - +2.5 1,044,393 - SM_b21379 0.56 -0.4 1,044,402 - SM_b21379 0.59 -1.1 1,044,419 + SM_b21379 0.63 -0.9 1,044,419 + SM_b21379 0.63 +0.9 1,044,420 - SM_b21379 0.63 -2.8 1,044,420 - SM_b21379 0.63 -0.5 1,044,420 - SM_b21379 0.63 -1.6 1,044,420 - SM_b21379 0.63 +2.0 1,044,420 - SM_b21379 0.63 +1.0 1,044,422 + SM_b21379 0.64 -0.1 1,044,422 + SM_b21379 0.64 +0.3
Or see this region's nucleotide sequence