Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21313 and SM_b21314 are separated by 130 nucleotides SM_b21314 and SM_b21315 are separated by 274 nucleotides
SM_b21313: SM_b21313 - bifunctional glycosyltransferase, at 977,203 to 979,452
_b21313
SM_b21314: SM_b21314 - secreted calcium-binding protein, at 979,583 to 980,242
_b21314
SM_b21315: SM_b21315 - HlyD family protein secretion protein, at 980,517 to 981,938
_b21315
Position (kb) 979
980
981 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 978.893 kb on + strand, within SM_b21313 at 978.893 kb on + strand, within SM_b21313 at 978.893 kb on + strand, within SM_b21313 at 978.893 kb on + strand, within SM_b21313 at 978.894 kb on - strand, within SM_b21313 at 978.894 kb on - strand, within SM_b21313 at 978.894 kb on - strand, within SM_b21313 at 978.894 kb on - strand, within SM_b21313 at 978.945 kb on - strand, within SM_b21313 at 979.097 kb on - strand, within SM_b21313 at 979.370 kb on - strand at 979.581 kb on + strand at 979.582 kb on - strand at 979.600 kb on - strand at 979.703 kb on - strand, within SM_b21314 at 979.747 kb on + strand, within SM_b21314 at 979.747 kb on + strand, within SM_b21314 at 979.757 kb on + strand, within SM_b21314 at 979.758 kb on - strand, within SM_b21314 at 979.832 kb on - strand, within SM_b21314 at 979.832 kb on - strand, within SM_b21314 at 979.987 kb on - strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.020 kb on + strand, within SM_b21314 at 980.040 kb on + strand, within SM_b21314 at 980.040 kb on + strand, within SM_b21314 at 980.041 kb on - strand, within SM_b21314 at 980.041 kb on - strand, within SM_b21314 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand, within SM_b21315 at 980.734 kb on + strand at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.735 kb on - strand, within SM_b21315 at 980.739 kb on + strand, within SM_b21315 at 980.740 kb on - strand, within SM_b21315 at 980.740 kb on - strand, within SM_b21315 at 980.776 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.814 kb on + strand, within SM_b21315 at 980.815 kb on - strand, within SM_b21315 at 980.815 kb on - strand, within SM_b21315 at 981.237 kb on - strand, within SM_b21315
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 978,893 + SM_b21313 0.75 -0.7 978,893 + SM_b21313 0.75 -0.1 978,893 + SM_b21313 0.75 +0.3 978,893 + SM_b21313 0.75 -1.6 978,894 - SM_b21313 0.75 -2.1 978,894 - SM_b21313 0.75 -0.6 978,894 - SM_b21313 0.75 -0.2 978,894 - SM_b21313 0.75 -1.6 978,945 - SM_b21313 0.77 +0.6 979,097 - SM_b21313 0.84 +0.7 979,370 - -0.7 979,581 + +0.1 979,582 - -0.0 979,600 - -1.3 979,703 - SM_b21314 0.18 -1.3 979,747 + SM_b21314 0.25 -0.4 979,747 + SM_b21314 0.25 -1.0 979,757 + SM_b21314 0.26 +0.8 979,758 - SM_b21314 0.27 +0.6 979,832 - SM_b21314 0.38 +0.2 979,832 - SM_b21314 0.38 -0.1 979,987 - SM_b21314 0.61 +0.9 980,020 + SM_b21314 0.66 -0.5 980,020 + SM_b21314 0.66 +0.6 980,020 + SM_b21314 0.66 -0.2 980,040 + SM_b21314 0.69 -2.8 980,040 + SM_b21314 0.69 +1.5 980,041 - SM_b21314 0.69 +0.2 980,041 - SM_b21314 0.69 +0.6 980,734 + SM_b21315 0.15 -0.4 980,734 + SM_b21315 0.15 +1.7 980,734 + SM_b21315 0.15 -0.0 980,734 + +0.6 980,735 - SM_b21315 0.15 +0.3 980,735 - SM_b21315 0.15 +0.1 980,735 - SM_b21315 0.15 +0.6 980,735 - SM_b21315 0.15 +1.2 980,735 - SM_b21315 0.15 +0.0 980,735 - SM_b21315 0.15 -0.2 980,739 + SM_b21315 0.16 -0.3 980,740 - SM_b21315 0.16 +0.6 980,740 - SM_b21315 0.16 +0.8 980,776 + SM_b21315 0.18 +1.2 980,814 + SM_b21315 0.21 -0.2 980,814 + SM_b21315 0.21 -0.9 980,814 + SM_b21315 0.21 +0.1 980,815 - SM_b21315 0.21 +0.9 980,815 - SM_b21315 0.21 +0.0 981,237 - SM_b21315 0.51 -0.9
Or see this region's nucleotide sequence