Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21258

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21257 and SM_b21258 overlap by 34 nucleotidesSM_b21258 and SM_b21259 overlap by 4 nucleotides SM_b21257: SM_b21257 - adenylate cyclase, at 828,467 to 829,486 _b21257 SM_b21258: SM_b21258 - adenylate cyclase, at 829,453 to 829,815 _b21258 SM_b21259: SM_b21259 - hypothetical protein, at 829,812 to 830,792 _b21259 Position (kb) 829 830Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 828.689 kb on - strand, within SM_b21257at 828.754 kb on + strand, within SM_b21257at 828.755 kb on + strand, within SM_b21257at 828.758 kb on + strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.759 kb on - strand, within SM_b21257at 828.762 kb on - strand, within SM_b21257at 828.866 kb on + strand, within SM_b21257at 828.866 kb on + strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.867 kb on - strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.870 kb on + strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 828.871 kb on - strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.039 kb on + strand, within SM_b21257at 829.040 kb on - strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.052 kb on + strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.053 kb on - strand, within SM_b21257at 829.081 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.145 kb on - strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.190 kb on + strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.191 kb on - strand, within SM_b21257at 829.192 kb on + strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.193 kb on - strand, within SM_b21257at 829.293 kb on - strand, within SM_b21257at 829.416 kb on + strandat 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.549 kb on + strand, within SM_b21258at 829.550 kb on - strand, within SM_b21258at 829.660 kb on + strand, within SM_b21258at 829.706 kb on - strand, within SM_b21258at 829.757 kb on - strand, within SM_b21258at 829.835 kb on - strandat 829.835 kb on - strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.875 kb on + strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.876 kb on - strandat 829.937 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 829.965 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.001 kb on + strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.002 kb on - strand, within SM_b21259at 830.136 kb on + strand, within SM_b21259at 830.155 kb on - strand, within SM_b21259at 830.168 kb on - strand, within SM_b21259at 830.205 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.587 kb on + strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.588 kb on - strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.635 kb on + strand, within SM_b21259at 830.670 kb on + strand, within SM_b21259at 830.721 kb on + strandat 830.722 kb on - strandat 830.724 kb on + strandat 830.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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828,689 - SM_b21257 0.22 -0.3
828,754 + SM_b21257 0.28 +0.1
828,755 + SM_b21257 0.28 -1.9
828,758 + SM_b21257 0.29 +0.0
828,759 - SM_b21257 0.29 +0.6
828,759 - SM_b21257 0.29 -0.4
828,759 - SM_b21257 0.29 -1.2
828,759 - SM_b21257 0.29 +0.4
828,762 - SM_b21257 0.29 +0.1
828,866 + SM_b21257 0.39 -0.5
828,866 + SM_b21257 0.39 -1.4
828,867 - SM_b21257 0.39 +0.2
828,867 - SM_b21257 0.39 +0.2
828,870 + SM_b21257 0.40 -0.3
828,870 + SM_b21257 0.40 +4.1
828,870 + SM_b21257 0.40 +0.4
828,871 - SM_b21257 0.40 +2.5
828,871 - SM_b21257 0.40 +0.3
829,039 + SM_b21257 0.56 +0.6
829,039 + SM_b21257 0.56 +0.3
829,039 + SM_b21257 0.56 +0.6
829,039 + SM_b21257 0.56 -1.0
829,040 - SM_b21257 0.56 -0.1
829,052 + SM_b21257 0.57 -0.4
829,052 + SM_b21257 0.57 -1.9
829,052 + SM_b21257 0.57 -0.0
829,052 + SM_b21257 0.57 -1.3
829,053 - SM_b21257 0.57 -1.4
829,053 - SM_b21257 0.57 +0.1
829,053 - SM_b21257 0.57 -1.7
829,053 - SM_b21257 0.57 +0.4
829,081 - SM_b21257 0.60 +0.0
829,145 - SM_b21257 0.66 +0.4
829,145 - SM_b21257 0.66 +0.3
829,190 + SM_b21257 0.71 +2.4
829,190 + SM_b21257 0.71 -0.0
829,191 - SM_b21257 0.71 -0.3
829,191 - SM_b21257 0.71 +0.7
829,191 - SM_b21257 0.71 -0.7
829,191 - SM_b21257 0.71 -0.6
829,192 + SM_b21257 0.71 -0.3
829,193 - SM_b21257 0.71 +0.5
829,193 - SM_b21257 0.71 -1.1
829,193 - SM_b21257 0.71 +0.2
829,293 - SM_b21257 0.81 +1.6
829,416 + +0.2
829,549 + SM_b21258 0.26 +0.8
829,549 + SM_b21258 0.26 -2.1
829,549 + SM_b21258 0.26 -1.9
829,550 - SM_b21258 0.27 -0.6
829,660 + SM_b21258 0.57 -2.4
829,706 - SM_b21258 0.70 +0.1
829,757 - SM_b21258 0.84 +0.5
829,835 - +0.4
829,835 - -0.1
829,875 + +0.8
829,875 + -0.5
829,875 + +0.5
829,875 + +1.1
829,876 - +2.0
829,876 - -0.1
829,876 - +0.6
829,876 - +0.6
829,876 - +1.0
829,876 - -0.9
829,937 + SM_b21259 0.13 +0.3
829,965 + SM_b21259 0.16 +1.4
829,965 + SM_b21259 0.16 -1.9
829,965 + SM_b21259 0.16 -1.7
829,965 + SM_b21259 0.16 +0.0
830,001 + SM_b21259 0.19 +0.3
830,001 + SM_b21259 0.19 +0.1
830,001 + SM_b21259 0.19 +0.7
830,002 - SM_b21259 0.19 +1.0
830,002 - SM_b21259 0.19 +0.3
830,136 + SM_b21259 0.33 -2.3
830,155 - SM_b21259 0.35 -0.3
830,168 - SM_b21259 0.36 +0.9
830,205 + SM_b21259 0.40 +0.6
830,587 + SM_b21259 0.79 -0.4
830,587 + SM_b21259 0.79 +1.8
830,587 + SM_b21259 0.79 +0.3
830,587 + SM_b21259 0.79 -0.9
830,588 - SM_b21259 0.79 +0.3
830,588 - SM_b21259 0.79 -1.0
830,635 + SM_b21259 0.84 -0.4
830,635 + SM_b21259 0.84 +0.2
830,670 + SM_b21259 0.87 -1.1
830,721 + -0.6
830,722 - -0.5
830,724 + -1.1
830,725 - +0.0

Or see this region's nucleotide sequence