Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21199 and SM_b21200 are separated by 202 nucleotides SM_b21200 and SM_b21201 overlap by 4 nucleotides
SM_b21199: SM_b21199 - oligopeptide ABC transporter ATP-binding protein, at 948,716 to 950,317
_b21199
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680
_b21201
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 949.571 kb on + strand, within SM_b21199 at 949.571 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.573 kb on + strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.574 kb on - strand, within SM_b21199 at 949.639 kb on + strand, within SM_b21199 at 949.743 kb on - strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.153 kb on + strand, within SM_b21199 at 950.154 kb on - strand, within SM_b21199 at 950.201 kb on + strand at 950.201 kb on + strand at 950.279 kb on + strand at 950.281 kb on + strand at 950.465 kb on - strand at 950.575 kb on + strand at 950.851 kb on + strand, within SM_b21200 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200 at 951.359 kb on + strand, within SM_b21200 at 951.360 kb on - strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.729 kb on - strand at 951.729 kb on - strand at 951.770 kb on + strand at 951.770 kb on + strand at 951.771 kb on - strand at 951.771 kb on - strand at 951.978 kb on + strand at 952.001 kb on + strand at 952.001 kb on + strand at 952.002 kb on - strand at 952.029 kb on + strand at 952.246 kb on - strand, within SM_b21201 at 952.480 kb on - strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.751 kb on - strand, within SM_b21201 at 952.751 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 949,571 + SM_b21199 0.53 +0.7 949,571 + SM_b21199 0.53 +2.7 949,573 + SM_b21199 0.53 -1.3 949,573 + SM_b21199 0.53 +0.2 949,574 - SM_b21199 0.54 -1.4 949,574 - SM_b21199 0.54 +0.4 949,639 + SM_b21199 0.58 +0.1 949,743 - SM_b21199 0.64 -0.4 950,153 + SM_b21199 0.90 +0.7 950,153 + SM_b21199 0.90 +0.2 950,153 + SM_b21199 0.90 +0.4 950,154 - SM_b21199 0.90 +0.3 950,201 + -1.9 950,201 + -0.8 950,279 + +1.2 950,281 + -0.0 950,465 - -0.0 950,575 + -1.0 950,851 + SM_b21200 0.25 -0.7 950,954 - SM_b21200 0.32 -0.1 950,985 + SM_b21200 0.35 -0.1 950,985 + SM_b21200 0.35 -0.7 950,985 + SM_b21200 0.35 -0.9 951,040 - SM_b21200 0.39 -1.4 951,359 + SM_b21200 0.62 +0.1 951,360 - SM_b21200 0.62 -0.8 951,568 + SM_b21200 0.78 -0.0 951,568 + SM_b21200 0.78 +0.4 951,729 - +0.6 951,729 - -0.1 951,770 + -0.5 951,770 + +0.5 951,771 - -1.6 951,771 - -1.2 951,978 + +0.0 952,001 + +1.0 952,001 + -0.6 952,002 - -0.2 952,029 + -2.2 952,246 - SM_b21201 0.21 +1.2 952,480 - SM_b21201 0.34 +1.2 952,750 + SM_b21201 0.49 +0.2 952,750 + SM_b21201 0.49 -0.4 952,751 - SM_b21201 0.49 +0.1 952,751 - +3.2
Or see this region's nucleotide sequence