Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21037 and SM_b21038 are separated by 6 nucleotides SM_b21038 and SM_b21039 are separated by 13 nucleotides SM_b21039 and SM_b21040 overlap by 4 nucleotides
SM_b21037: SM_b21037 - oligopeptidemurein peptide ABC transporter substrate-binding protein precursor, at 654,648 to 656,243
_b21037
SM_b21038: SM_b21038 - oligopeptidemurein peptide ABC transporter permease, at 656,250 to 657,227
_b21038
SM_b21039: SM_b21039 - oligopeptidemurein peptide ABC transporter permease, at 657,241 to 658,116
_b21039
SM_b21040: SM_b21040 - oligopeptidemurein peptide ABC transporter ATP-binding protein, at 658,113 to 659,786
_b21040
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.287 kb on + strand, within SM_b21037 at 655.287 kb on + strand, within SM_b21037 at 655.319 kb on + strand, within SM_b21037 at 655.320 kb on - strand, within SM_b21037 at 655.475 kb on - strand, within SM_b21037 at 655.701 kb on + strand, within SM_b21037 at 655.702 kb on - strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.013 kb on + strand, within SM_b21037 at 656.065 kb on + strand, within SM_b21037 at 656.132 kb on - strand at 656.139 kb on + strand at 656.139 kb on + strand at 656.184 kb on + strand at 656.185 kb on - strand at 656.384 kb on + strand, within SM_b21038 at 656.448 kb on + strand, within SM_b21038 at 656.449 kb on - strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.496 kb on + strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.497 kb on - strand, within SM_b21038 at 656.501 kb on - strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.502 kb on + strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.503 kb on - strand, within SM_b21038 at 656.812 kb on + strand, within SM_b21038 at 656.813 kb on - strand, within SM_b21038 at 656.837 kb on - strand, within SM_b21038 at 656.909 kb on - strand, within SM_b21038 at 656.913 kb on + strand, within SM_b21038 at 657.189 kb on + strand at 657.190 kb on - strand at 657.190 kb on - strand at 657.322 kb on + strand at 657.322 kb on + strand at 657.323 kb on - strand at 657.323 kb on - strand at 657.389 kb on - strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.417 kb on + strand, within SM_b21039 at 657.436 kb on + strand, within SM_b21039 at 657.437 kb on - strand, within SM_b21039 at 657.443 kb on - strand, within SM_b21039 at 657.494 kb on - strand, within SM_b21039 at 657.690 kb on - strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.733 kb on + strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.734 kb on - strand, within SM_b21039 at 657.781 kb on + strand, within SM_b21039 at 657.782 kb on - strand, within SM_b21039 at 657.875 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 657.988 kb on + strand, within SM_b21039 at 658.006 kb on + strand, within SM_b21039
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 655,287 + SM_b21037 0.40 +2.5 655,287 + SM_b21037 0.40 +0.5 655,319 + SM_b21037 0.42 -2.8 655,320 - SM_b21037 0.42 +0.3 655,475 - SM_b21037 0.52 +0.9 655,701 + SM_b21037 0.66 +0.1 655,702 - SM_b21037 0.66 -2.0 656,013 + SM_b21037 0.86 -0.1 656,013 + SM_b21037 0.86 +0.3 656,013 + SM_b21037 0.86 +0.6 656,065 + SM_b21037 0.89 -0.8 656,132 - +1.0 656,139 + +0.4 656,139 + -0.5 656,184 + -1.6 656,185 - +0.9 656,384 + SM_b21038 0.14 +0.4 656,448 + SM_b21038 0.20 -0.1 656,449 - SM_b21038 0.20 -0.7 656,496 + SM_b21038 0.25 -0.2 656,496 + SM_b21038 0.25 -0.6 656,496 + SM_b21038 0.25 -0.3 656,496 + SM_b21038 0.25 +0.3 656,497 - SM_b21038 0.25 -3.1 656,497 - SM_b21038 0.25 -2.2 656,497 - SM_b21038 0.25 +0.1 656,497 - SM_b21038 0.25 +0.6 656,497 - SM_b21038 0.25 -0.7 656,501 - SM_b21038 0.26 -0.3 656,502 + SM_b21038 0.26 -1.2 656,502 + SM_b21038 0.26 -0.9 656,502 + SM_b21038 0.26 +0.4 656,502 + SM_b21038 0.26 -2.8 656,503 - SM_b21038 0.26 +0.5 656,503 - SM_b21038 0.26 -0.0 656,503 - SM_b21038 0.26 -1.7 656,503 - SM_b21038 0.26 +1.1 656,503 - SM_b21038 0.26 -2.3 656,503 - SM_b21038 0.26 -1.8 656,503 - SM_b21038 0.26 -0.4 656,503 - SM_b21038 0.26 -0.1 656,812 + SM_b21038 0.57 -2.2 656,813 - SM_b21038 0.58 +0.4 656,837 - SM_b21038 0.60 +2.1 656,909 - SM_b21038 0.67 -1.1 656,913 + SM_b21038 0.68 +0.4 657,189 + -1.4 657,190 - +1.3 657,190 - +0.3 657,322 + -1.4 657,322 + -0.0 657,323 - -0.5 657,323 - -0.8 657,389 - SM_b21039 0.17 +0.4 657,417 + SM_b21039 0.20 -0.3 657,417 + SM_b21039 0.20 -0.1 657,436 + SM_b21039 0.22 +1.6 657,437 - SM_b21039 0.22 +1.0 657,443 - SM_b21039 0.23 -2.3 657,494 - SM_b21039 0.29 -0.1 657,690 - SM_b21039 0.51 +0.1 657,733 + SM_b21039 0.56 +0.5 657,733 + SM_b21039 0.56 +0.3 657,734 - SM_b21039 0.56 +0.8 657,734 - SM_b21039 0.56 -1.2 657,734 - SM_b21039 0.56 -0.3 657,781 + SM_b21039 0.62 -0.5 657,782 - SM_b21039 0.62 -2.2 657,875 + SM_b21039 0.72 -2.0 657,988 + SM_b21039 0.85 -1.9 657,988 + SM_b21039 0.85 -1.5 658,006 + SM_b21039 0.87 -0.4
Or see this region's nucleotide sequence