Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21021 and SM_b21022 are separated by 4 nucleotides SM_b21022 and SM_b21023 are separated by 3 nucleotides SM_b21023 and SM_b21024 are separated by 168 nucleotides SM_b21024 and SM_b21025 are separated by 11 nucleotides
SM_b21021: SM_b21021 - transcriptional regulator, at 644,175 to 645,122
_b21021
SM_b21022: SM_b21022 - autoinducer-2 (AI-2) kinase, at 645,127 to 646,725
_b21022
SM_b21023: SM_b21023 - hypothetical protein, at 646,729 to 647,043
_b21023
SM_b21024: SM_b21024 - hypothetical protein, at 647,212 to 647,379
_b21024
SM_b21025: SM_b21025 - hypothetical protein, at 647,391 to 647,810
_b21025
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.244 kb on + strand at 644.245 kb on - strand at 644.245 kb on - strand at 644.247 kb on + strand at 644.247 kb on + strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.248 kb on - strand at 644.250 kb on + strand at 644.250 kb on + strand at 644.348 kb on + strand, within SM_b21021 at 644.360 kb on + strand, within SM_b21021 at 644.360 kb on + strand at 644.373 kb on + strand, within SM_b21021 at 644.374 kb on - strand, within SM_b21021 at 644.416 kb on - strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.433 kb on + strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.601 kb on - strand, within SM_b21021 at 644.609 kb on - strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.637 kb on + strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.638 kb on - strand, within SM_b21021 at 644.784 kb on + strand, within SM_b21021 at 644.785 kb on - strand, within SM_b21021 at 644.842 kb on - strand, within SM_b21021 at 645.023 kb on + strand, within SM_b21021 at 645.024 kb on - strand, within SM_b21021 at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.028 kb on + strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.029 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.140 kb on - strand at 645.141 kb on + strand at 645.142 kb on - strand at 645.398 kb on - strand, within SM_b21022 at 645.505 kb on + strand, within SM_b21022 at 645.506 kb on - strand, within SM_b21022 at 645.508 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.584 kb on - strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.663 kb on + strand, within SM_b21022 at 645.748 kb on - strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 645.972 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.049 kb on + strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.050 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022 at 646.118 kb on - strand, within SM_b21022 at 646.163 kb on - strand, within SM_b21022 at 646.211 kb on - strand, within SM_b21022 at 646.341 kb on - strand, within SM_b21022 at 646.341 kb on - strand, within SM_b21022 at 646.359 kb on + strand, within SM_b21022 at 646.359 kb on + strand, within SM_b21022 at 646.587 kb on + strand at 646.587 kb on + strand at 646.587 kb on + strand at 646.588 kb on - strand at 646.620 kb on + strand at 646.621 kb on - strand at 646.693 kb on + strand at 646.696 kb on - strand at 646.713 kb on + strand at 646.714 kb on - strand at 646.714 kb on - strand at 646.723 kb on + strand at 646.723 kb on + strand at 646.724 kb on - strand at 646.746 kb on + strand at 646.746 kb on + strand at 646.747 kb on - strand at 646.747 kb on - strand at 646.804 kb on + strand, within SM_b21023 at 646.805 kb on - strand, within SM_b21023 at 646.805 kb on - strand, within SM_b21023 at 646.805 kb on - strand, within SM_b21023 at 646.885 kb on + strand, within SM_b21023 at 646.886 kb on - strand, within SM_b21023 at 646.886 kb on - strand, within SM_b21023 at 646.998 kb on - strand, within SM_b21023 at 646.999 kb on + strand, within SM_b21023 at 646.999 kb on + strand, within SM_b21023 at 646.999 kb on + strand, within SM_b21023 at 647.000 kb on - strand, within SM_b21023 at 647.000 kb on - strand, within SM_b21023 at 647.001 kb on + strand, within SM_b21023 at 647.002 kb on - strand, within SM_b21023 at 647.042 kb on - strand at 647.055 kb on + strand at 647.194 kb on - strand at 647.194 kb on - strand at 647.288 kb on + strand, within SM_b21024 at 647.289 kb on - strand, within SM_b21024 at 647.289 kb on - strand, within SM_b21024 at 647.443 kb on - strand, within SM_b21025 at 647.578 kb on + strand, within SM_b21025 at 647.579 kb on - strand, within SM_b21025 at 647.580 kb on + strand, within SM_b21025 at 647.580 kb on + strand, within SM_b21025 at 647.580 kb on + strand, within SM_b21025 at 647.580 kb on + strand, within SM_b21025 at 647.581 kb on - strand, within SM_b21025 at 647.581 kb on - strand, within SM_b21025 at 647.581 kb on - strand, within SM_b21025 at 647.706 kb on - strand, within SM_b21025
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 644,244 + -2.8 644,245 - +0.0 644,245 - -0.8 644,247 + -2.2 644,247 + +0.1 644,248 - +0.1 644,248 - -0.2 644,248 - +0.4 644,250 + +0.5 644,250 + -0.8 644,348 + SM_b21021 0.18 +0.8 644,360 + SM_b21021 0.20 -1.2 644,360 + +1.5 644,373 + SM_b21021 0.21 +0.4 644,374 - SM_b21021 0.21 -0.4 644,416 - SM_b21021 0.25 +1.0 644,433 + SM_b21021 0.27 -3.2 644,433 + SM_b21021 0.27 -0.1 644,601 - SM_b21021 0.45 +0.7 644,601 - SM_b21021 0.45 +2.1 644,609 - SM_b21021 0.46 -1.1 644,637 + SM_b21021 0.49 +0.3 644,637 + SM_b21021 0.49 +0.1 644,638 - SM_b21021 0.49 -0.2 644,638 - SM_b21021 0.49 -0.5 644,638 - SM_b21021 0.49 +1.1 644,638 - SM_b21021 0.49 +1.0 644,784 + SM_b21021 0.64 -0.8 644,785 - SM_b21021 0.64 +0.2 644,842 - SM_b21021 0.70 -0.3 645,023 + SM_b21021 0.89 +0.3 645,024 - SM_b21021 0.90 +0.9 645,028 + -2.6 645,028 + -0.2 645,028 + -1.4 645,028 + -0.9 645,029 - +0.6 645,029 - -1.3 645,029 - +0.2 645,029 - +0.4 645,140 - -1.8 645,140 - -3.2 645,140 - -0.2 645,140 - -0.8 645,140 - -2.3 645,140 - -0.7 645,140 - -0.2 645,140 - +0.8 645,140 - -0.9 645,141 + -1.5 645,142 - +2.5 645,398 - SM_b21022 0.17 -1.2 645,505 + SM_b21022 0.24 -0.1 645,506 - SM_b21022 0.24 -2.9 645,508 - SM_b21022 0.24 -0.3 645,584 - SM_b21022 0.29 +0.3 645,584 - SM_b21022 0.29 -0.0 645,584 - SM_b21022 0.29 -0.3 645,663 + SM_b21022 0.34 -1.0 645,663 + SM_b21022 0.34 -1.3 645,663 + SM_b21022 0.34 -0.1 645,748 - SM_b21022 0.39 -2.0 645,972 + SM_b21022 0.53 +2.3 645,972 + SM_b21022 0.53 -0.4 646,049 + SM_b21022 0.58 -2.4 646,049 + SM_b21022 0.58 -0.2 646,050 - SM_b21022 0.58 -0.6 646,050 - SM_b21022 0.58 -2.7 646,050 - SM_b21022 0.58 +0.6 646,050 - SM_b21022 0.58 -0.7 646,118 - SM_b21022 0.62 +0.1 646,118 - SM_b21022 0.62 +0.4 646,163 - SM_b21022 0.65 +0.2 646,211 - SM_b21022 0.68 +0.3 646,341 - SM_b21022 0.76 -2.5 646,341 - SM_b21022 0.76 -2.5 646,359 + SM_b21022 0.77 -1.4 646,359 + SM_b21022 0.77 +0.2 646,587 + -1.7 646,587 + +1.2 646,587 + +1.6 646,588 - -3.7 646,620 + +0.1 646,621 - -3.7 646,693 + +1.9 646,696 - +0.5 646,713 + +0.3 646,714 - +1.2 646,714 - -0.1 646,723 + -0.8 646,723 + -1.7 646,724 - +0.8 646,746 + +0.2 646,746 + +1.4 646,747 - +0.7 646,747 - +0.1 646,804 + SM_b21023 0.24 -0.2 646,805 - SM_b21023 0.24 -2.3 646,805 - SM_b21023 0.24 -0.6 646,805 - SM_b21023 0.24 +0.5 646,885 + SM_b21023 0.50 -0.4 646,886 - SM_b21023 0.50 +0.4 646,886 - SM_b21023 0.50 -1.1 646,998 - SM_b21023 0.85 +0.1 646,999 + SM_b21023 0.86 -0.2 646,999 + SM_b21023 0.86 -0.3 646,999 + SM_b21023 0.86 -1.1 647,000 - SM_b21023 0.86 +0.3 647,000 - SM_b21023 0.86 -0.1 647,001 + SM_b21023 0.86 +0.5 647,002 - SM_b21023 0.87 -0.2 647,042 - +0.0 647,055 + -0.2 647,194 - -0.0 647,194 - +0.7 647,288 + SM_b21024 0.45 +0.6 647,289 - SM_b21024 0.46 +0.9 647,289 - SM_b21024 0.46 +0.6 647,443 - SM_b21025 0.12 +0.2 647,578 + SM_b21025 0.45 +0.1 647,579 - SM_b21025 0.45 +0.3 647,580 + SM_b21025 0.45 -3.3 647,580 + SM_b21025 0.45 -2.3 647,580 + SM_b21025 0.45 -3.0 647,580 + SM_b21025 0.45 -0.9 647,581 - SM_b21025 0.45 -0.8 647,581 - SM_b21025 0.45 -1.2 647,581 - SM_b21025 0.45 -0.4 647,706 - SM_b21025 0.75 -2.2
Or see this region's nucleotide sequence