Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20977 and SM_b20978 are separated by 234 nucleotides SM_b20978 and SM_b20979 are separated by 87 nucleotides SM_b20979 and SM_b20980 overlap by 4 nucleotides SM_b20980 and SM_b20981 are separated by 181 nucleotides
SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719
_b20977
SM_b20978: SM_b20978 - hypothetical protein, at 1,210,954 to 1,211,505
_b20978
SM_b20979: SM_b20979 - large C4-dicarboxylate uptake permease, DedA family protein, at 1,211,593 to 1,212,906
_b20979
SM_b20980: SM_b20980 - small C4-dicarboxylate uptake permease, at 1,212,903 to 1,213,415
_b20980
SM_b20981: SM_b20981 - C4-dicarboxylate transporter substrate-binding protein precursor, at 1,213,597 to 1,214,574
_b20981
Position (kb)
1211
1212
1213 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1210.656 kb on - strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.806 kb on + strand at 1210.807 kb on - strand at 1210.807 kb on - strand at 1210.807 kb on - strand at 1210.808 kb on + strand at 1210.823 kb on + strand at 1210.956 kb on - strand at 1210.956 kb on - strand at 1211.021 kb on + strand, within SM_b20978 at 1211.057 kb on + strand, within SM_b20978 at 1211.057 kb on + strand, within SM_b20978 at 1211.088 kb on - strand, within SM_b20978 at 1211.171 kb on + strand, within SM_b20978 at 1211.172 kb on - strand, within SM_b20978 at 1211.177 kb on + strand, within SM_b20978 at 1211.203 kb on - strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.300 kb on + strand, within SM_b20978 at 1211.301 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.326 kb on - strand, within SM_b20978 at 1211.341 kb on - strand, within SM_b20978 at 1211.401 kb on + strand, within SM_b20978 at 1211.513 kb on - strand at 1211.535 kb on + strand at 1211.581 kb on + strand at 1211.582 kb on - strand at 1211.582 kb on - strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.615 kb on + strand at 1211.693 kb on + strand at 1211.693 kb on + strand at 1211.694 kb on - strand at 1211.714 kb on + strand at 1211.753 kb on + strand, within SM_b20979 at 1211.753 kb on + strand, within SM_b20979 at 1211.753 kb on + strand, within SM_b20979 at 1211.753 kb on + strand, within SM_b20979 at 1211.754 kb on - strand, within SM_b20979 at 1211.754 kb on - strand, within SM_b20979 at 1211.754 kb on - strand, within SM_b20979 at 1211.754 kb on - strand, within SM_b20979 at 1212.017 kb on + strand, within SM_b20979 at 1212.149 kb on + strand, within SM_b20979 at 1212.302 kb on + strand at 1212.303 kb on - strand, within SM_b20979 at 1212.303 kb on - strand, within SM_b20979 at 1212.326 kb on + strand, within SM_b20979 at 1212.326 kb on + strand, within SM_b20979 at 1212.327 kb on - strand, within SM_b20979 at 1212.327 kb on - strand, within SM_b20979 at 1212.367 kb on + strand, within SM_b20979 at 1212.367 kb on + strand, within SM_b20979 at 1212.368 kb on - strand, within SM_b20979 at 1212.368 kb on - strand, within SM_b20979 at 1212.426 kb on + strand, within SM_b20979 at 1212.574 kb on - strand, within SM_b20979 at 1212.574 kb on - strand, within SM_b20979 at 1212.661 kb on + strand, within SM_b20979 at 1212.793 kb on - strand at 1212.899 kb on - strand at 1212.899 kb on - strand at 1212.899 kb on - strand at 1212.906 kb on + strand at 1213.006 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.040 kb on + strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.041 kb on - strand, within SM_b20980 at 1213.117 kb on + strand, within SM_b20980 at 1213.118 kb on - strand, within SM_b20980 at 1213.118 kb on - strand, within SM_b20980 at 1213.232 kb on - strand, within SM_b20980 at 1213.232 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.259 kb on - strand, within SM_b20980 at 1213.289 kb on - strand, within SM_b20980 at 1213.628 kb on + strand at 1213.628 kb on + strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.629 kb on - strand at 1213.661 kb on + strand at 1213.746 kb on - strand, within SM_b20981 at 1213.746 kb on - strand, within SM_b20981
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,210,656 - +2.1 1,210,806 + -0.1 1,210,806 + -1.4 1,210,806 + -0.3 1,210,806 + -1.0 1,210,807 - -0.1 1,210,807 - -1.4 1,210,807 - +0.2 1,210,808 + -0.2 1,210,823 + -1.0 1,210,956 - -1.0 1,210,956 - -0.5 1,211,021 + SM_b20978 0.12 +0.8 1,211,057 + SM_b20978 0.19 -0.8 1,211,057 + SM_b20978 0.19 -0.9 1,211,088 - SM_b20978 0.24 -0.4 1,211,171 + SM_b20978 0.39 +0.5 1,211,172 - SM_b20978 0.39 +0.1 1,211,177 + SM_b20978 0.40 -0.5 1,211,203 - SM_b20978 0.45 -0.2 1,211,300 + SM_b20978 0.63 +2.5 1,211,300 + SM_b20978 0.63 -0.5 1,211,300 + SM_b20978 0.63 +1.3 1,211,300 + SM_b20978 0.63 -1.1 1,211,300 + SM_b20978 0.63 -1.8 1,211,300 + SM_b20978 0.63 +0.5 1,211,300 + SM_b20978 0.63 -0.2 1,211,300 + SM_b20978 0.63 -0.4 1,211,301 - SM_b20978 0.63 -3.5 1,211,326 - SM_b20978 0.67 -0.4 1,211,326 - SM_b20978 0.67 -1.4 1,211,326 - SM_b20978 0.67 -0.8 1,211,341 - SM_b20978 0.70 -0.1 1,211,401 + SM_b20978 0.81 -0.2 1,211,513 - -1.3 1,211,535 + -0.5 1,211,581 + -1.0 1,211,582 - +2.6 1,211,582 - +1.6 1,211,615 + -2.9 1,211,615 + -1.3 1,211,615 + -1.6 1,211,615 + -0.6 1,211,693 + +0.1 1,211,693 + +0.5 1,211,694 - -0.6 1,211,714 + +0.5 1,211,753 + SM_b20979 0.12 +1.4 1,211,753 + SM_b20979 0.12 -1.1 1,211,753 + SM_b20979 0.12 -1.7 1,211,753 + SM_b20979 0.12 -2.4 1,211,754 - SM_b20979 0.12 +1.6 1,211,754 - SM_b20979 0.12 -2.0 1,211,754 - SM_b20979 0.12 +0.1 1,211,754 - SM_b20979 0.12 +0.5 1,212,017 + SM_b20979 0.32 -0.2 1,212,149 + SM_b20979 0.42 -2.0 1,212,302 + +1.2 1,212,303 - SM_b20979 0.54 -3.5 1,212,303 - SM_b20979 0.54 +0.0 1,212,326 + SM_b20979 0.56 -2.0 1,212,326 + SM_b20979 0.56 +0.8 1,212,327 - SM_b20979 0.56 +1.2 1,212,327 - SM_b20979 0.56 -2.3 1,212,367 + SM_b20979 0.59 +0.2 1,212,367 + SM_b20979 0.59 -1.3 1,212,368 - SM_b20979 0.59 -0.1 1,212,368 - SM_b20979 0.59 -1.2 1,212,426 + SM_b20979 0.63 -0.2 1,212,574 - SM_b20979 0.75 +0.5 1,212,574 - SM_b20979 0.75 -2.4 1,212,661 + SM_b20979 0.81 +2.8 1,212,793 - +0.3 1,212,899 - -0.4 1,212,899 - -2.5 1,212,899 - -1.6 1,212,906 + +1.8 1,213,006 + SM_b20980 0.20 +0.8 1,213,040 + SM_b20980 0.27 +2.0 1,213,040 + SM_b20980 0.27 -0.0 1,213,040 + SM_b20980 0.27 +0.4 1,213,041 - SM_b20980 0.27 -2.2 1,213,041 - SM_b20980 0.27 +0.2 1,213,041 - SM_b20980 0.27 +0.1 1,213,117 + SM_b20980 0.42 -1.4 1,213,118 - SM_b20980 0.42 -2.4 1,213,118 - SM_b20980 0.42 +0.2 1,213,232 - SM_b20980 0.64 +0.5 1,213,232 - SM_b20980 0.64 -0.8 1,213,259 - SM_b20980 0.69 -0.6 1,213,259 - SM_b20980 0.69 -1.3 1,213,259 - SM_b20980 0.69 -1.4 1,213,259 - SM_b20980 0.69 -0.7 1,213,289 - SM_b20980 0.75 +0.0 1,213,628 + -0.6 1,213,628 + -0.9 1,213,629 - -1.6 1,213,629 - -1.1 1,213,629 - -0.6 1,213,629 - -0.6 1,213,629 - +1.4 1,213,661 + +1.5 1,213,746 - SM_b20981 0.15 -0.1 1,213,746 - SM_b20981 0.15 -1.6
Or see this region's nucleotide sequence