Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20973 and SM_b20974 are separated by 13 nucleotides SM_b20974 and SM_b20975 are separated by 25 nucleotides SM_b20975 and SM_b20976 are separated by 73 nucleotides SM_b20976 and SM_b20977 are separated by 30 nucleotides
SM_b20973: SM_b20973 - hypothetical protein, at 1,203,418 to 1,206,444
_b20973
SM_b20974: SM_b20974 - oxidoreductase, at 1,206,458 to 1,207,126
_b20974
SM_b20975: SM_b20975 - amino acid uptake ABC transporter permease, at 1,207,152 to 1,208,801
_b20975
SM_b20976: SM_b20976 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,208,875 to 1,209,621
_b20976
SM_b20977: SM_b20977 - LacI family transcriptional regulator, at 1,209,652 to 1,210,719
_b20977
Position (kb)
1207
1208
1209 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1206.377 kb on + strand at 1206.525 kb on - strand at 1206.525 kb on - strand, within SM_b20974 at 1206.525 kb on - strand, within SM_b20974 at 1206.587 kb on - strand, within SM_b20974 at 1206.696 kb on + strand, within SM_b20974 at 1206.696 kb on + strand, within SM_b20974 at 1206.697 kb on - strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.702 kb on + strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.703 kb on - strand, within SM_b20974 at 1206.992 kb on + strand, within SM_b20974 at 1207.074 kb on + strand at 1207.074 kb on + strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.075 kb on - strand at 1207.171 kb on + strand at 1207.172 kb on - strand at 1207.182 kb on + strand at 1207.182 kb on + strand at 1207.183 kb on - strand at 1207.183 kb on - strand at 1207.183 kb on - strand at 1207.225 kb on + strand at 1207.225 kb on + strand at 1207.225 kb on + strand at 1207.244 kb on + strand at 1207.244 kb on + strand at 1207.244 kb on + strand at 1207.245 kb on - strand at 1207.247 kb on - strand at 1207.508 kb on - strand, within SM_b20975 at 1207.508 kb on - strand, within SM_b20975 at 1207.508 kb on - strand, within SM_b20975 at 1207.516 kb on + strand, within SM_b20975 at 1207.517 kb on - strand, within SM_b20975 at 1207.615 kb on + strand, within SM_b20975 at 1207.616 kb on - strand, within SM_b20975 at 1207.616 kb on - strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.620 kb on + strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.621 kb on - strand, within SM_b20975 at 1207.703 kb on - strand, within SM_b20975 at 1207.703 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1207.957 kb on - strand, within SM_b20975 at 1208.020 kb on + strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.021 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.111 kb on - strand, within SM_b20975 at 1208.164 kb on + strand, within SM_b20975 at 1208.432 kb on + strand, within SM_b20975 at 1208.433 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.498 kb on - strand, within SM_b20975 at 1208.734 kb on + strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.735 kb on - strand at 1208.876 kb on + strand at 1208.876 kb on + strand at 1208.877 kb on - strand at 1209.137 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.271 kb on + strand, within SM_b20976 at 1209.293 kb on + strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.294 kb on - strand, within SM_b20976 at 1209.461 kb on - strand, within SM_b20976 at 1209.538 kb on - strand, within SM_b20976 at 1209.667 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,206,377 + +1.0 1,206,525 - +0.2 1,206,525 - SM_b20974 0.10 -0.1 1,206,525 - SM_b20974 0.10 -0.5 1,206,587 - SM_b20974 0.19 +1.2 1,206,696 + SM_b20974 0.36 -3.8 1,206,696 + SM_b20974 0.36 -3.5 1,206,697 - SM_b20974 0.36 -0.4 1,206,702 + SM_b20974 0.36 +0.9 1,206,702 + SM_b20974 0.36 +1.1 1,206,702 + SM_b20974 0.36 -0.1 1,206,702 + SM_b20974 0.36 +0.3 1,206,703 - SM_b20974 0.37 +0.5 1,206,703 - SM_b20974 0.37 -0.3 1,206,703 - SM_b20974 0.37 +0.9 1,206,992 + SM_b20974 0.80 -1.0 1,207,074 + -0.5 1,207,074 + -0.8 1,207,075 - -0.1 1,207,075 - -0.7 1,207,075 - +2.5 1,207,075 - -0.2 1,207,075 - +0.4 1,207,075 - -0.1 1,207,171 + -0.1 1,207,172 - +1.2 1,207,182 + -2.3 1,207,182 + -0.2 1,207,183 - -0.4 1,207,183 - -2.2 1,207,183 - -1.1 1,207,225 + +0.2 1,207,225 + +0.7 1,207,225 + +1.5 1,207,244 + -0.6 1,207,244 + -1.0 1,207,244 + +0.3 1,207,245 - -0.4 1,207,247 - -0.1 1,207,508 - SM_b20975 0.22 +0.3 1,207,508 - SM_b20975 0.22 -1.0 1,207,508 - SM_b20975 0.22 +1.8 1,207,516 + SM_b20975 0.22 +0.4 1,207,517 - SM_b20975 0.22 +0.0 1,207,615 + SM_b20975 0.28 -0.0 1,207,616 - SM_b20975 0.28 -0.6 1,207,616 - SM_b20975 0.28 +1.6 1,207,620 + SM_b20975 0.28 -1.3 1,207,620 + SM_b20975 0.28 +0.0 1,207,620 + SM_b20975 0.28 -0.1 1,207,621 - SM_b20975 0.28 +0.9 1,207,621 - SM_b20975 0.28 +0.9 1,207,621 - SM_b20975 0.28 +1.5 1,207,703 - SM_b20975 0.33 +0.3 1,207,703 - SM_b20975 0.33 +1.8 1,207,957 - SM_b20975 0.49 +0.2 1,207,957 - SM_b20975 0.49 +0.0 1,207,957 - SM_b20975 0.49 -0.5 1,208,020 + SM_b20975 0.53 -0.4 1,208,021 - SM_b20975 0.53 +1.2 1,208,021 - SM_b20975 0.53 +0.8 1,208,111 - SM_b20975 0.58 +0.6 1,208,111 - SM_b20975 0.58 +1.0 1,208,164 + SM_b20975 0.61 -0.4 1,208,432 + SM_b20975 0.78 -0.1 1,208,433 - SM_b20975 0.78 -2.0 1,208,498 - SM_b20975 0.82 +1.2 1,208,498 - SM_b20975 0.82 +0.1 1,208,734 + +0.3 1,208,735 - +1.2 1,208,735 - +1.2 1,208,735 - -0.2 1,208,876 + +0.8 1,208,876 + +0.4 1,208,877 - -2.5 1,209,137 + SM_b20976 0.35 +0.3 1,209,271 + SM_b20976 0.53 -3.0 1,209,271 + SM_b20976 0.53 -0.8 1,209,293 + SM_b20976 0.56 -1.4 1,209,294 - SM_b20976 0.56 +0.8 1,209,294 - SM_b20976 0.56 -1.5 1,209,294 - SM_b20976 0.56 -0.3 1,209,461 - SM_b20976 0.78 +0.6 1,209,538 - SM_b20976 0.89 -2.1 1,209,667 + +0.4
Or see this region's nucleotide sequence