Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20959

Experiment: Cisplatin 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20957 and SM_b20958 overlap by 1 nucleotidesSM_b20958 and SM_b20959 overlap by 4 nucleotidesSM_b20959 and SM_b20960 are separated by 4 nucleotidesSM_b20960 and SM_b20961 are separated by 54 nucleotides SM_b20957: SM_b20957 - glucosyltransferase, at 1,184,469 to 1,185,461 _b20957 SM_b20958: SM_b20958 - glucosyltransferase, at 1,185,461 to 1,186,390 _b20958 SM_b20959: SM_b20959 - glucosyltransferase, at 1,186,387 to 1,187,433 _b20959 SM_b20960: SM_b20960 - UDP-glucose pyrophosphorylase, at 1,187,438 to 1,188,343 _b20960 SM_b20961: SM_b20961 - protein tyrosine kinase MPA1 family protein, at 1,188,398 to 1,190,758 _b20961 Position (kb) 1186 1187 1188Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.459 kb on + strandat 1185.459 kb on + strandat 1185.459 kb on + strandat 1186.345 kb on + strandat 1186.362 kb on - strandat 1186.443 kb on + strandat 1186.444 kb on - strandat 1186.456 kb on - strandat 1186.683 kb on + strand, within SM_b20959at 1186.683 kb on + strand, within SM_b20959at 1186.683 kb on + strand, within SM_b20959at 1186.972 kb on + strand, within SM_b20959at 1186.972 kb on + strand, within SM_b20959at 1186.973 kb on - strand, within SM_b20959at 1187.036 kb on - strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.041 kb on + strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.042 kb on - strand, within SM_b20959at 1187.047 kb on - strand, within SM_b20959at 1187.091 kb on - strand, within SM_b20959at 1187.420 kb on + strandat 1187.421 kb on - strandat 1187.421 kb on - strandat 1187.435 kb on - strandat 1187.435 kb on - strandat 1187.564 kb on + strand, within SM_b20960at 1187.565 kb on - strand, within SM_b20960at 1187.565 kb on - strand, within SM_b20960at 1187.565 kb on - strand, within SM_b20960at 1187.602 kb on + strand, within SM_b20960at 1187.602 kb on + strand, within SM_b20960at 1187.602 kb on + strand, within SM_b20960at 1187.602 kb on + strand, within SM_b20960at 1187.603 kb on - strand, within SM_b20960at 1187.603 kb on - strand, within SM_b20960at 1187.603 kb on - strand, within SM_b20960at 1187.894 kb on + strand, within SM_b20960at 1187.895 kb on - strand, within SM_b20960at 1187.957 kb on + strand, within SM_b20960at 1188.050 kb on + strand, within SM_b20960at 1188.051 kb on - strand, within SM_b20960at 1188.051 kb on - strand, within SM_b20960at 1188.051 kb on - strand, within SM_b20960at 1188.053 kb on + strand, within SM_b20960at 1188.053 kb on + strand, within SM_b20960at 1188.054 kb on - strand, within SM_b20960at 1188.069 kb on - strand, within SM_b20960at 1188.069 kb on - strand, within SM_b20960at 1188.069 kb on - strand, within SM_b20960at 1188.069 kb on - strand, within SM_b20960at 1188.191 kb on + strand, within SM_b20960at 1188.192 kb on - strand, within SM_b20960at 1188.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml
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1,185,459 + -0.6
1,185,459 + +1.1
1,185,459 + -1.4
1,186,345 + +0.7
1,186,362 - +0.8
1,186,443 + +1.2
1,186,444 - -1.0
1,186,456 - -0.2
1,186,683 + SM_b20959 0.28 -2.6
1,186,683 + SM_b20959 0.28 -3.4
1,186,683 + SM_b20959 0.28 +0.5
1,186,972 + SM_b20959 0.56 +0.4
1,186,972 + SM_b20959 0.56 -0.8
1,186,973 - SM_b20959 0.56 +0.3
1,187,036 - SM_b20959 0.62 +0.4
1,187,041 + SM_b20959 0.62 +0.7
1,187,041 + SM_b20959 0.62 +1.5
1,187,041 + SM_b20959 0.62 -0.3
1,187,041 + SM_b20959 0.62 +0.0
1,187,041 + SM_b20959 0.62 +0.7
1,187,041 + SM_b20959 0.62 -0.1
1,187,041 + SM_b20959 0.62 -0.4
1,187,042 - SM_b20959 0.63 +0.8
1,187,042 - SM_b20959 0.63 +1.6
1,187,042 - SM_b20959 0.63 +0.4
1,187,042 - SM_b20959 0.63 +0.5
1,187,042 - SM_b20959 0.63 +0.2
1,187,042 - SM_b20959 0.63 -2.4
1,187,042 - SM_b20959 0.63 +1.5
1,187,047 - SM_b20959 0.63 +0.7
1,187,091 - SM_b20959 0.67 +0.9
1,187,420 + -1.1
1,187,421 - +0.5
1,187,421 - +1.1
1,187,435 - +2.4
1,187,435 - -1.1
1,187,564 + SM_b20960 0.14 +0.2
1,187,565 - SM_b20960 0.14 -0.4
1,187,565 - SM_b20960 0.14 -1.6
1,187,565 - SM_b20960 0.14 +1.5
1,187,602 + SM_b20960 0.18 +0.3
1,187,602 + SM_b20960 0.18 +0.8
1,187,602 + SM_b20960 0.18 -0.8
1,187,602 + SM_b20960 0.18 +0.2
1,187,603 - SM_b20960 0.18 -1.0
1,187,603 - SM_b20960 0.18 -1.0
1,187,603 - SM_b20960 0.18 -1.1
1,187,894 + SM_b20960 0.50 -0.6
1,187,895 - SM_b20960 0.50 -0.4
1,187,957 + SM_b20960 0.57 +0.2
1,188,050 + SM_b20960 0.68 +1.7
1,188,051 - SM_b20960 0.68 -1.6
1,188,051 - SM_b20960 0.68 +0.4
1,188,051 - SM_b20960 0.68 -0.4
1,188,053 + SM_b20960 0.68 +0.2
1,188,053 + SM_b20960 0.68 +0.4
1,188,054 - SM_b20960 0.68 +0.0
1,188,069 - SM_b20960 0.70 -0.5
1,188,069 - SM_b20960 0.70 +0.6
1,188,069 - SM_b20960 0.70 +0.7
1,188,069 - SM_b20960 0.70 +0.1
1,188,191 + SM_b20960 0.83 +1.6
1,188,192 - SM_b20960 0.83 -0.5
1,188,284 - +0.7

Or see this region's nucleotide sequence