Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20924 and SM_b21672 are separated by 32 nucleotides SM_b21672 and SM_b20925 are separated by 100 nucleotides SM_b20925 and SM_b20926 are separated by 121 nucleotides SM_b20926 and SM_b20927 are separated by 8 nucleotides
SM_b20924: SM_b20924 - alpha-L-arabinofuranosidase, at 1,147,361 to 1,148,881
_b20924
SM_b21672: SM_b21672 - hypothetical protein, at 1,148,914 to 1,149,081
_b21672
SM_b20925: SM_b20925 - hypothetical protein, at 1,149,182 to 1,150,300
_b20925
SM_b20926: SM_b20926 - hypothetical protein, at 1,150,422 to 1,150,922
_b20926
SM_b20927: SM_b20927 - hypothetical protein, at 1,150,931 to 1,151,413
_b20927
Position (kb)
1149
1150
1151 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1148.187 kb on + strand, within SM_b20924 at 1148.188 kb on - strand, within SM_b20924 at 1148.224 kb on - strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.284 kb on - strand, within SM_b20924 at 1148.300 kb on + strand, within SM_b20924 at 1148.301 kb on - strand, within SM_b20924 at 1148.409 kb on + strand, within SM_b20924 at 1148.410 kb on - strand, within SM_b20924 at 1148.439 kb on + strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.784 kb on + strand at 1148.821 kb on - strand at 1148.822 kb on + strand at 1148.848 kb on + strand at 1148.848 kb on + strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.851 kb on - strand at 1148.851 kb on - strand at 1148.897 kb on - strand at 1148.897 kb on - strand at 1149.009 kb on + strand, within SM_b21672 at 1149.079 kb on + strand at 1149.080 kb on - strand at 1149.088 kb on - strand at 1149.174 kb on + strand at 1149.175 kb on - strand at 1149.264 kb on + strand at 1149.265 kb on - strand at 1149.408 kb on + strand, within SM_b20925 at 1149.409 kb on - strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.634 kb on + strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.637 kb on + strand, within SM_b20925 at 1149.638 kb on - strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.780 kb on - strand, within SM_b20925 at 1149.794 kb on - strand, within SM_b20925 at 1149.815 kb on + strand, within SM_b20925 at 1150.523 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.886 kb on - strand at 1150.886 kb on - strand at 1150.895 kb on - strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.913 kb on - strand at 1150.932 kb on + strand at 1150.932 kb on + strand at 1151.032 kb on + strand, within SM_b20927 at 1151.032 kb on + strand, within SM_b20927 at 1151.033 kb on - strand, within SM_b20927 at 1151.197 kb on - strand, within SM_b20927 at 1151.220 kb on - strand, within SM_b20927 at 1151.220 kb on - strand, within SM_b20927
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,148,187 + SM_b20924 0.54 -1.5 1,148,188 - SM_b20924 0.54 -0.5 1,148,224 - SM_b20924 0.57 -0.6 1,148,283 + SM_b20924 0.61 -0.4 1,148,283 + SM_b20924 0.61 -4.1 1,148,284 - SM_b20924 0.61 -0.6 1,148,300 + SM_b20924 0.62 +1.0 1,148,301 - SM_b20924 0.62 -0.4 1,148,409 + SM_b20924 0.69 +2.0 1,148,410 - SM_b20924 0.69 -0.1 1,148,439 + SM_b20924 0.71 -0.1 1,148,440 - SM_b20924 0.71 -0.6 1,148,440 - SM_b20924 0.71 +0.5 1,148,463 + SM_b20924 0.72 -1.8 1,148,463 + SM_b20924 0.72 +2.2 1,148,655 + SM_b20924 0.85 -1.0 1,148,655 + SM_b20924 0.85 +1.2 1,148,699 - SM_b20924 0.88 -2.9 1,148,699 - SM_b20924 0.88 +0.2 1,148,784 + -0.8 1,148,821 - +1.0 1,148,822 + -0.2 1,148,848 + -2.0 1,148,848 + +1.5 1,148,849 - +1.2 1,148,849 - -0.7 1,148,849 - -0.5 1,148,851 - -0.3 1,148,851 - +0.1 1,148,897 - -0.8 1,148,897 - +0.3 1,149,009 + SM_b21672 0.57 +1.0 1,149,079 + +0.4 1,149,080 - -0.0 1,149,088 - +1.2 1,149,174 + -0.4 1,149,175 - +1.1 1,149,264 + -0.3 1,149,265 - -0.3 1,149,408 + SM_b20925 0.20 -0.4 1,149,409 - SM_b20925 0.20 -1.5 1,149,561 + SM_b20925 0.34 +1.9 1,149,561 + SM_b20925 0.34 -0.5 1,149,561 + SM_b20925 0.34 +0.6 1,149,634 + SM_b20925 0.40 -0.2 1,149,635 - SM_b20925 0.40 -1.3 1,149,635 - SM_b20925 0.40 -0.5 1,149,635 - SM_b20925 0.40 -0.4 1,149,637 + SM_b20925 0.41 -2.1 1,149,638 - SM_b20925 0.41 -0.9 1,149,779 + SM_b20925 0.53 -0.4 1,149,779 + SM_b20925 0.53 -2.1 1,149,779 + SM_b20925 0.53 -0.4 1,149,779 + SM_b20925 0.53 -0.2 1,149,780 - SM_b20925 0.53 +0.3 1,149,794 - SM_b20925 0.55 -0.7 1,149,815 + SM_b20925 0.57 -1.0 1,150,523 + SM_b20926 0.20 -0.0 1,150,554 + SM_b20926 0.26 -0.2 1,150,554 + SM_b20926 0.26 -1.0 1,150,554 + SM_b20926 0.26 +0.1 1,150,554 + SM_b20926 0.26 +0.3 1,150,554 + SM_b20926 0.26 +0.5 1,150,554 + SM_b20926 0.26 -1.4 1,150,554 + SM_b20926 0.26 +0.0 1,150,555 - SM_b20926 0.27 +0.1 1,150,555 - SM_b20926 0.27 +0.7 1,150,555 - SM_b20926 0.27 +1.2 1,150,555 - SM_b20926 0.27 -1.2 1,150,886 - -0.6 1,150,886 - -0.3 1,150,895 - -3.0 1,150,912 + -0.3 1,150,912 + -2.3 1,150,912 + +0.2 1,150,912 + -0.3 1,150,913 - -0.8 1,150,932 + +0.6 1,150,932 + +0.2 1,151,032 + SM_b20927 0.21 -0.6 1,151,032 + SM_b20927 0.21 +0.8 1,151,033 - SM_b20927 0.21 +1.5 1,151,197 - SM_b20927 0.55 -0.8 1,151,220 - SM_b20927 0.60 +0.4 1,151,220 - SM_b20927 0.60 +0.9
Or see this region's nucleotide sequence