Experiment: Cisplatin 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20909 and SM_b20910 are separated by 58 nucleotides SM_b20910 and SM_b20911 are separated by 224 nucleotides SM_b20911 and SM_b20912 are separated by 23 nucleotides SM_b20912 and SM_b20913 overlap by 19 nucleotides SM_b20913 and SM_b21682 overlap by 8 nucleotides SM_b21682 and SM_b20914 are separated by 17 nucleotides
SM_b20909: SM_b20909 - hypothetical protein, at 1,318,695 to 1,318,988
_b20909
SM_b20910: SM_b20910 - hypothetical protein, at 1,319,047 to 1,319,355
_b20910
SM_b20911: SM_b20911 - hypothetical protein, at 1,319,580 to 1,319,786
_b20911
SM_b20912: SM_b20912 - ATP-dependent DNA ligase, at 1,319,810 to 1,320,904
_b20912
SM_b20913: SM_b20913 - hypothetical protein, at 1,320,886 to 1,321,488
_b20913
SM_b21682: SM_b21682 - hypothetical protein, at 1,321,481 to 1,321,666
_b21682
SM_b20914: SM_b20914 - hypothetical protein, at 1,321,684 to 1,322,694
_b20914
Position (kb)
1319
1320
1321 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1318.826 kb on + strand, within SM_b20909 at 1318.827 kb on - strand, within SM_b20909 at 1318.963 kb on + strand at 1318.963 kb on + strand at 1318.964 kb on - strand at 1319.022 kb on + strand at 1319.027 kb on + strand at 1319.048 kb on + strand at 1319.130 kb on + strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.131 kb on - strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.178 kb on + strand, within SM_b20910 at 1319.179 kb on - strand, within SM_b20910 at 1319.254 kb on + strand, within SM_b20910 at 1319.269 kb on + strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.270 kb on - strand, within SM_b20910 at 1319.416 kb on + strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.419 kb on - strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.422 kb on + strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.423 kb on - strand at 1319.428 kb on + strand at 1319.428 kb on + strand at 1319.429 kb on - strand at 1319.429 kb on - strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.432 kb on + strand at 1319.433 kb on - strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.599 kb on + strand at 1319.600 kb on - strand at 1319.664 kb on + strand, within SM_b20911 at 1319.664 kb on + strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.665 kb on - strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.666 kb on + strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.667 kb on - strand, within SM_b20911 at 1319.695 kb on + strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.696 kb on - strand, within SM_b20911 at 1319.762 kb on + strand, within SM_b20911 at 1319.763 kb on - strand, within SM_b20911 at 1319.931 kb on - strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1319.945 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.083 kb on + strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.084 kb on - strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.142 kb on + strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.143 kb on - strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.174 kb on + strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.175 kb on - strand, within SM_b20912 at 1320.266 kb on - strand, within SM_b20912 at 1320.318 kb on + strand, within SM_b20912 at 1320.319 kb on - strand, within SM_b20912 at 1320.507 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.525 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.722 kb on + strand, within SM_b20912 at 1320.815 kb on + strand at 1320.860 kb on + strand at 1320.861 kb on - strand at 1320.861 kb on - strand at 1320.906 kb on - strand at 1320.968 kb on + strand, within SM_b20913 at 1321.132 kb on + strand, within SM_b20913 at 1321.145 kb on + strand, within SM_b20913 at 1321.145 kb on + strand, within SM_b20913 at 1321.355 kb on + strand, within SM_b20913 at 1321.382 kb on - strand, within SM_b20913 at 1321.382 kb on - strand, within SM_b20913 at 1321.526 kb on + strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.527 kb on - strand, within SM_b21682 at 1321.536 kb on - strand, within SM_b21682 at 1321.536 kb on - strand, within SM_b21682 at 1321.685 kb on + strand at 1321.686 kb on - strand at 1321.686 kb on - strand at 1321.766 kb on + strand at 1321.766 kb on + strand at 1321.767 kb on - strand at 1321.769 kb on + strand at 1321.770 kb on - strand at 1321.788 kb on - strand, within SM_b20914 at 1321.788 kb on - strand, within SM_b20914
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.0005 mg/ml remove 1,318,826 + SM_b20909 0.45 -1.0 1,318,827 - SM_b20909 0.45 +0.6 1,318,963 + -0.4 1,318,963 + +1.5 1,318,964 - +0.2 1,319,022 + -0.3 1,319,027 + -2.0 1,319,048 + -1.4 1,319,130 + SM_b20910 0.27 +0.1 1,319,131 - SM_b20910 0.27 -0.6 1,319,131 - SM_b20910 0.27 +0.2 1,319,178 + SM_b20910 0.42 +1.6 1,319,178 + SM_b20910 0.42 -0.1 1,319,179 - SM_b20910 0.43 +0.4 1,319,254 + SM_b20910 0.67 -1.4 1,319,269 + SM_b20910 0.72 -0.5 1,319,270 - SM_b20910 0.72 +0.6 1,319,270 - SM_b20910 0.72 +0.1 1,319,416 + +0.6 1,319,419 - -0.6 1,319,419 - +0.3 1,319,419 - -3.0 1,319,422 + +0.2 1,319,422 + +0.4 1,319,422 + +0.9 1,319,422 + +0.4 1,319,422 + -1.8 1,319,423 - +1.5 1,319,423 - -0.6 1,319,423 - -0.2 1,319,423 - +0.6 1,319,423 - +1.8 1,319,428 + +1.8 1,319,428 + +0.9 1,319,429 - +0.2 1,319,429 - +4.1 1,319,432 + -0.0 1,319,432 + +0.3 1,319,432 + +1.9 1,319,433 - +0.4 1,319,599 + +0.1 1,319,599 + +1.2 1,319,599 + +0.0 1,319,599 + +0.1 1,319,600 - +0.1 1,319,664 + SM_b20911 0.41 +0.2 1,319,664 + SM_b20911 0.41 -1.3 1,319,665 - SM_b20911 0.41 -2.4 1,319,665 - SM_b20911 0.41 +0.2 1,319,665 - SM_b20911 0.41 +0.9 1,319,665 - SM_b20911 0.41 +1.3 1,319,666 + SM_b20911 0.42 -0.4 1,319,666 + SM_b20911 0.42 +0.7 1,319,667 - SM_b20911 0.42 -0.7 1,319,667 - SM_b20911 0.42 -0.4 1,319,695 + SM_b20911 0.56 +2.3 1,319,696 - SM_b20911 0.56 -0.6 1,319,696 - SM_b20911 0.56 -0.2 1,319,762 + SM_b20911 0.88 -1.6 1,319,763 - SM_b20911 0.88 -0.4 1,319,931 - SM_b20912 0.11 +0.2 1,319,945 + SM_b20912 0.12 -0.4 1,319,945 + SM_b20912 0.12 -2.7 1,320,083 + SM_b20912 0.25 -1.7 1,320,083 + SM_b20912 0.25 +0.3 1,320,084 - SM_b20912 0.25 +0.1 1,320,084 - SM_b20912 0.25 -1.5 1,320,142 + SM_b20912 0.30 +0.8 1,320,142 + SM_b20912 0.30 +0.8 1,320,143 - SM_b20912 0.30 +0.3 1,320,143 - SM_b20912 0.30 -0.2 1,320,174 + SM_b20912 0.33 -3.0 1,320,174 + SM_b20912 0.33 -2.9 1,320,175 - SM_b20912 0.33 +0.1 1,320,175 - SM_b20912 0.33 -0.7 1,320,175 - SM_b20912 0.33 -0.4 1,320,266 - SM_b20912 0.42 +0.2 1,320,318 + SM_b20912 0.46 -0.2 1,320,319 - SM_b20912 0.46 +0.3 1,320,507 + SM_b20912 0.64 -2.2 1,320,525 + SM_b20912 0.65 -1.8 1,320,525 + SM_b20912 0.65 -0.1 1,320,722 + SM_b20912 0.83 +0.4 1,320,722 + SM_b20912 0.83 -1.9 1,320,815 + -0.3 1,320,860 + -1.1 1,320,861 - +0.0 1,320,861 - +0.5 1,320,906 - -4.2 1,320,968 + SM_b20913 0.14 -1.0 1,321,132 + SM_b20913 0.41 -1.6 1,321,145 + SM_b20913 0.43 -1.6 1,321,145 + SM_b20913 0.43 -1.0 1,321,355 + SM_b20913 0.78 +0.3 1,321,382 - SM_b20913 0.82 -0.8 1,321,382 - SM_b20913 0.82 +0.8 1,321,526 + SM_b21682 0.24 -0.5 1,321,527 - SM_b21682 0.25 +0.5 1,321,527 - SM_b21682 0.25 -0.4 1,321,527 - SM_b21682 0.25 -0.1 1,321,527 - SM_b21682 0.25 +0.3 1,321,536 - SM_b21682 0.30 +0.6 1,321,536 - SM_b21682 0.30 +2.2 1,321,685 + +1.3 1,321,686 - +0.0 1,321,686 - +0.1 1,321,766 + -1.6 1,321,766 + -1.6 1,321,767 - +0.8 1,321,769 + +0.2 1,321,770 - -0.4 1,321,788 - SM_b20914 0.10 -0.1 1,321,788 - SM_b20914 0.10 +0.7
Or see this region's nucleotide sequence